CI01000201_00572895_00575129 (TRAPPC2)


Basic Information

Item Value
gene id CI01000201_00572895_00575129
gene name TRAPPC2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000201
NCBI id null
chromosome length 704500
location 572719 ~ 575704 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000201_00572895_00575129.mRNA
TTATTTAAAGGAGGTGTGTTGATAGAATGTGTCATTTGTAAAGAAAGCCAAACTAACGTTATCATTCCTGTGGTAAGATGTGTTTTTGTGCACATTCATCAGTGTTTACATGTCCAGTAATGTCAATAACTGACTGTCGATTTCATGTTTACAGCTCTAAACACTGACGATTCACAATGTCGGGGAGTTTTTATTTCGTTATGGTGGGTCATCATGATAACCCAGTGTTTGAGATGGAGTTCCTCCCTCCTGGAAAGGCGGAATCAAAGGTGGGCATGATGATGTCAGTGATTCCTGACAACATGGATGATCACAGACATCTGAACCAGTTCATCGCTCATGCCGCTCTTGATCTGGTTGATGAGAACATGTGGCAGTCCAGCAACATGTACCTGAAGACTGTGGACAAATTCAATGAATGGTTTGTCTCTGCCTTCGTCACTGCTGGTCATATCCTTCTCATCCAAATCTTTCTGACATGCATGACTGAATCAAACTCACTCACATTTAACTGACCCATTGAAATGATTATTCCTTAACGTTACTTGCATACATATGAGATTTATTATGCTCCATGATGTTCGGCAAGAGGATGGAATCAAGAACTTCTTTAATGATGTTTATGATCTGTACATCAAGGTAAATCATATATTATTTCTGTAGTGACATTTCAGCACCATATGAATTTGTTTTAAAACATTTTATATGTGCTTTTTTACCCAGTTTGCAATGAATCCCTTCTATGAAGCCAACGCACCGATACGCTCCACAGCTTTCGACAGGAAAGTGCAGTTTCTCGGGAAGAAGCATCTCCTCAGTTGATTTGTTTTATACACATACTCTTTTGTTTTTTGCATAAATATACAGGCGTTCTGTTTATACTATCTCAACATTCAGATACATATTTCATGTTTGAGTTGTTGATACTCAGTGTCTTCACCTGCTACTGTACACCAAATGGTGTTTGAATGAAGATCATTTTTAAAGAAGTCTGTAAGACGCAGCACTAACAGGAATGTAAATGCACATTAATACAAAAACGGTCAACCGCACGATGAAGATTTCAAACACTTGTATATTACTAAATCAA

Function

symbol description
trappc2 Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in endoplasmic reticulum-Golgi intermediate compartment and perinuclear region of cytoplasm. Predicted to be part of TRAPP complex. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in X-linked spondyloepiphyseal dysplasia tarda. Orthologous to human TRAPPC2 (trafficking protein particle complex subunit 2).

GO:

id name namespace
GO:0048208 COPII vesicle coating biological_process

KEGG:

id description
K20301 TRAPPC2, TRS20; trafficking protein particle complex subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000201_00572895_00575129.mRNA True 1090 mRNA 0.38 2 572719 575704

Neighbor

gene id symbol gene type direction distance location
CI01000201_00547876_00556142 GPM6BB, GPM6B coding upstream 16464 547876 ~ 556255 (+)
CI01000201_00473896_00474283 NA coding upstream 98283 473896 ~ 474436 (+)
CI01000201_00421647_00426906 TBL1X coding upstream 145813 420586 ~ 426906 (+)
CI01000201_00394321_00396791 NA coding upstream 175724 394152 ~ 396995 (+)
CI01000201_00254354_00285896 NA coding upstream 286657 254115 ~ 286062 (+)
CI01000201_00576577_00577506 NA coding downstream 873 576577 ~ 578901 (+)
G387849 NA non-coding upstream 45348 498786 ~ 527371 (+)
G387848 NA non-coding upstream 83017 489405 ~ 489702 (+)
G387838 NA non-coding upstream 166274 406213 ~ 406445 (+)
G387807 NA non-coding upstream 187617 340187 ~ 385102 (+)
G387804 NA non-coding upstream 218069 322822 ~ 354650 (+)
G387862 NA non-coding downstream 12761 588465 ~ 589474 (+)
G387827 NA non-coding downstream 39227 614931 ~ 616868 (+)
G387876 NA non-coding downstream 48071 623775 ~ 623986 (+)
G387834 NA non-coding downstream 50244 625948 ~ 629376 (+)
G387857 NA non-coding downstream 68841 644545 ~ 645170 (+)

Expression


Co-expression Network