G387881


Basic Information

Item Value
gene id G387881
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000201
NCBI id null
chromosome length 704500
location 662170 ~ 663023 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU443956
TCTGGTAAAAGAGGTCCCTCACTGTGACAAATCTCCCCCTTTACACTGAAGCCATTATTACATACAACCAATACTGCCAGAGTACAAACAATAAATGTTTAACATCTCTGACTGCGTCTCGCTGTAATTACTCAATCTTTTTTGTCTGGCCAGTGAAGGACACACAGCAGCAACATTCCAGCACATGAACCCGATCGCTCATGTATGCGCCGCATCAATAATTCAGTCTGGAGAGCAGAGCTCATCATGTTCCCTCGCAGCGTTTCCATTCCAAACGTCCCGCCCTTCTTCATCTGGACGGACACTATTTAACTGTAAATGTGAGGAAAAAAACTTTATCGCATCAATTTCCTTGTGACACAGAAAGTTAGAAATAACTAACACATATCGGTTGTGTTCTAAAACCTAGTGGGCAACCTACATAGGCAGCAACCTTCTAAGGGAGCATCTTACTTGAAATAAGGCATATGGATACGTGAAGGTTTGGAGGCAGAAATTCTCAATTTCCCAAACTCACCGCAACCCGCCAAAATAAGAGTTCAGAAAACTATCTGCAGATACACACACAAACTCACGGCTCTTCACCGCAACCCGCCAAAATAAAAGTTCAGAAAACTATCTGCAGATACACACACAAACTCACGGCTCTTCACCGCAACCCGCCAAAATAAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU443956 True 673 lncRNA 0.43 2 662170 663023

Neighbor

gene id symbol gene type direction distance location
CI01000201_00576577_00577506 NA coding upstream 83269 576577 ~ 578901 (+)
CI01000201_00572895_00575129 TRAPPC2 coding upstream 86466 572719 ~ 575704 (+)
CI01000201_00547876_00556142 GPM6BB, GPM6B coding upstream 105915 547876 ~ 556255 (+)
CI01000201_00473896_00474283 NA coding upstream 187734 473896 ~ 474436 (+)
CI01000201_00421647_00426906 TBL1X coding upstream 235264 420586 ~ 426906 (+)
G387857 NA non-coding upstream 17000 644545 ~ 645170 (+)
G387834 NA non-coding upstream 32794 625948 ~ 629376 (+)
G387876 NA non-coding upstream 38184 623775 ~ 623986 (+)
G387827 NA non-coding upstream 45302 614931 ~ 616868 (+)
G387819 NA non-coding upstream 48785 522909 ~ 613385 (+)

Expression


Co-expression Network