XLOC_012126 (pabpc4)


Basic Information

Item Value
gene id XLOC_012126
gene name pabpc4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 25303671 ~ 25326685 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023903
ATGAACGCAGCGACCGCGGGGAGTTATCCGATGGCTTCTCTTTATGTGGGCGACCTGCACCCCGATATCACGGAGGCGATGCTGTATGAGAAATTCAGTCCGGCCGGCCCGGTGCTCTCCATCCGCGTGTGTCGGGATATGATCACGCGGCGCTCGCTGGGCTATGCCTACGTCAACTTCCAGCAGCCTGCGGACGCGGAGAGAGCTTTGGACACAATGAACTTCGATGTGGTCAAAGGAAAGCCCATCAGAATCATGTGGTCACAAAGAGATCCATCACTTAGGAAATCTGGGGTTGGAAACGTATTTATCAAAAATCTGGACAAGTCCATCGACAACAAAGCTCTGTATGACACCTTCTCTGCCTTTGGAAACATCCTGTCTTGCAAGGTGGTGTGCGACGAGAACGGATCGAAAGGCTATGCCTTTGTGCATTTTGAAACTCAGGACGCAGCCGATCGTGCCATTGAGAAGATGAATGGAATGTTGCTGAACGACCGCAAGGTGTTTGTGGGCCGTTTCAAGTCCAGGAAGGAGAGAGAGGCAGAAATGGGTGCCAAAGCCAAAGAGTTCACTAATGTTTACATCAAGAACTTTGGCGATGACATGGATGATCAGAGACTGAAGGAGCTCTTTGATAAATATGGTAAAACACTGAGCGTGAAGGTCATGACTGACCCCACAGGGAAATCTCGGGGATTTGGTTTTGTTAGCTACGAGAAGCATGAAGATGCTAACAAGGCGGTGGAAGAGATGAATGGTACTGAGCTCAATGGTAAGACGGTGTTTGTTGGCCGAGCACAAAAAAAAATGGAGCGACAAGCAGAACTCAAGAGGAAGTTTGAACAGCTTAAACAGGAAAGAATCAGCAGATATCAGGGTGTTAACTTGTACATCAAGAATCTTGATGACACCATCGATGATGAGAAACTTCGTAAAGAGTTTTCTCCTTTTGGCTCCATTACAAGTGCCAAGgtgaTGCTGGAGGAGGGCAGGTCCAAAGGTTTTGGTTTTGTGTGTTTCTCCTCTCCTGAGGAAGCCACAAAGGCTGTGACAGAGATGAATGGGCGTATTGTGGGCTCCAAACCACTATACGTAGCCCTAGCTCAACGTAAAGAAGAGCGCAAAGCTCATCTGACCAACCAGTACATGCAGCGGATTGCCGGTATGAGGGCCATGCCTGCCAATGCCATCATCAACCAGTTCCAGCCTGCCGGCGGATACTTCATGCCAGCCGTGCCACAGGCCCAGAACAGAACAACATACTATGCACCAAACCAGCTCACCCAGATGCGTCCAAACCCGCGCTGGCAGCAGCAGGGTGGCAGAGGTCAGGGTGGTTTCCAGGGCATGCCCAGCTCCTTACGCCAGCCAGGGCCCCGGGCTAACATTCGCCACCTGGCACCCAATGCTTCCAACCAAGGCCCACGCGGGATGCCCACAGGTGCACAGAGAGTGGGAGGGACTGGCCAACCGATGGGTCCCCGTCCTGCCATGGGGATGACGACCCCACGTGCCATGCCACCATACAAATATGCCTCCACCATCCGAAACACTCAGCCTCAGGTAGTGCAGCCCATCGCTCTGCAGCAGGCTCAGCCGGCTGTTCATGTTCAGGGTCAGGAGCCTCTCACTGCCTCCATGTTAGCTGCTGCTCCTCCTCAGGAACAGAAACAGATGCTTGGTGAGCGTTTGTTCCCTCTTATCCAGGCGATGCATCCCAGTCTAGCTGGAAAAATCACAGGAATGCTGCTCGAAATCGACAACTCTGAGCTGCTGCACATGCTGGAGTCCCATGAGTCTCTGCGCTCTAAGgTGGAGGAGGCTGTCGCTGTGCTTCAGGCTCATCAGGCCAAGAAAGACGCAACACAGAAAGTGGGAGTCACTGCTGCCACTGCAGCCGCAACATCCTGACCAGGTGAAGCTGAACAGCTGAAGAGAGATCACCACTGTCTGGTGTTGTCTGGTGGCAACCAatagaaacagaaaacagaaaatatatatatatataaaaaaatagaaaaatacaaaacaatacttGAACATAAAGAAAACCGTTTTGTTGCAGGGCTTATATTGTTAACTCTGTAATGATTTTTATCACCTGAAGTTGATTTTCAGAAGAGGTCTTTCTGTGAGGAAAGAGCCTCTGTCTTGTGGCCAGGACTGATTTTTTTCCCTGAGGAAGTGCAGACGTGCTTCTTCTGTGAGCTGTGAGTTTGCTGCTTTGATTGGACCTCACTTGTCCCATGACAGTAACTTGAGTGGTGTGGCACTCTAAATAAAGGGATgactatttaaaatgaacttattttctgtgcgtttcttttttttatatacatttagcCAAGACTAGAAGGCCATTTTTGGtgacaataattttattttatttttttatcaaaaatgaCCACATGGACAGTTCATTCATGTACAGGTTAAATATTCTGCTTAATTGGCCAATGCtgacataaatattaataatatcctATTTTACTTTTAGCTGATACTAATCACATGACCGAAGCCAATAGGTGTATTCGACTTAAACCACGGCTGCAGTCGGTGATCAAgaagattagccgagcgcagctGAAAACGGAGCTGTCAAGCCAGACACTTCGGTGCTCAAAGTCGTGGCAGTTATGAtaaccgatcacatggcgtcatcatcatcatttatttttaacaacaaaagatttacagtaaaaataaaagagaatacagtctctacaaactatagttcatttttaaacaataagggattTATGAGTTAATTTTAAGTAGCCtatacaacattcattcatttttttttcggcttagtccctttattaaacttatgcaggatatgttttacttagcggatgcctttccagctgcaacccatctctggaaaacatctatacacacctaacacactcatacactatacggacaatttagcctccccaattcacctgtaccgcatgtgggggaaatcagagcacccagaggaaacccaagcgaatgcggggagaacatgcaatctccacaccgaaacgccaactgactgtTTTAAAATTTGTGAGATGGAATTTGTCTAATAATAAACTTGAATCACATGTCGTTGTTGTCCTGCGGTGAATCCAGCcgatcgtgtaatatcggtgttgTCATcgcagctcctgcagtcgctcttcagatatGCCCCCAGCTGATTCAATCAACTGATCTCTGAGTGCTGTCGTGGTattttgatgccacatgtgacagtcatgCACAGTGTCAAGCCATTCTAAATTTCTAACCGgccaaagaaatgcgctataggtgaattgaataaactaaattgactgtagtgtataagtgtgaatgagtgttttccagcactgggttgcagctggaagggcatccactgcgtaaaacatatgctggataagttgggggttcattcacctgtggcgacccctaattaataatgGGACGAAGCTGaagagaaaattaatgaatgaaaagctGTTTTTACCTTATTTTGTGAATATGACGCTTATGTCTCTGATGCTCACACAGTGTGATGTACTCTGAAATACaaatgtgcaaaataatcattaagtcgtcaaaaacaatatttaaacaaatttagtaGAGAGCTTGTCAAATTACAAGTTGAGAAGAAGAGGTCCGCATTAGGGGCAAGTGATGATCTATCTGTCCATTACTGCTCCCGAGTTATGCATAAATGGGCATTAAATGCTAATTCAATAGTTTACATGtgtctgttgcctcattacaaacataaacaGCAAAGTGAATATAATTTACACTAAACCAACAAAAGATACAGTTTAACAGCAGATTAAACATATTCTATTTTTCCTGAATTTTATGTTTAGACAAGCTGTAAATAGATACtatctaaagcaggtcgcacaccagaaacTGCTCAGTGCCacgcatttcagaattctaaacagaAGTTTCTATCAGGGTCTGTAGCGATCAAATATTCCTGAGGTAACTGTCAGTGTTATTCTCTGATTtgcttatttttctgttttttttttttttttaccctggatttacatgagaatgaggtGTTTGAGGCTCACACAGTATGTTATTTCCATGCATTGaacttattattaggcctattcaATTATGCATATGTATATCCAGATTTTCTTTCAATGGCAACTTTAGTAATATCACAATAGAAACTTTATAAATCATGATAGTACTATTTA
>TCONS_00023904
CTCTTTCCCCGGCCACCACACCGTGAGTGTATAACTCACTGTTCTTCAgtacctttaaaaaaagaaaaaaaaacatataaaaaatacaaaataacgaAAATCTCAAAAAATAACTACAAACCAAACAacgttttttaaagaaaaaactttttttgttttttaaaagacgAGGTCTCGATCTACCCAGTGGTTTTCTGCCAGTTCCTCCGACCGGACTCATATGCTGTAGCTGTCACTGCTGCCGAAATCGTTTATTCGGGGAGAAGCGTAAAAGTTTAATAGAGGATTAAGAGACTCATTTGTCCCACTGGTTCTCGGACACTCTTTACGCACTGTCATTTCAGCACTAGACAAACACACGGGCTCAGAGGCTTGATCGACCCCGAGACATGAACGCAGCGACCGCGGGGAGTTATCCGATGGCTTCTCTTTATGTGGGCGACCTGCACCCCGATATCACGGAGGCGATGCTGTATGAGAAATTCAGTCCGGCCGGCCCGGTGCTCTCCATCCGCGTGTGTCGGGATATGATCACGCGGCGCTCGCTGGGCTATGCCTACGTCAACTTCCAGCAGCCTGCGGACGCGGAGAGAGCTTTGGACACAATGAACTTCGATGTGGTCAAAGGAAAGCCCATCAGAATCATGTGGTCACAAAGAGATCCATCACTTAGGAAATCTGGGGTTGGAAACGTATTTATCAAAAATCTGGACAAGTCCATCGACAACAAAGCTCTGTATGACACCTTCTCTGCCTTTGGAAACATCCTGTCTTGCAAGGTGGTGTGCGACGAGAACGGATCGAAAGGCTATGCCTTTGTGCATTTTGAAACTCAGGACGCAGCCGATCGTGCCATTGAGAAGATGAATGGAATGTTGCTGAACGACCGCAAGGTGTTTGTGGGCCGTTTCAAGTCCAGGAAGGAGAGAGAGGCAGAAATGGGTGCCAAAGCCAAAGAGTTCACTAATGTTTACATCAAGAACTTTGGCGATGACATGGATGATCAGAGACTGAAGGAGCTCTTTGATAAATATGGTAAAACACTGAGCGTGAAGGTCATGACTGACCCCACAGGGAAATCTCGGGGATTTGGTTTTGTTAGCTACGAGAAGCATGAAGATGCTAACAAGGCGGTGGAAGAGATGAATGGTACTGAGCTCAATGGTAAGACGGTGTTTGTTGGCCGAGCACAAAAAAAAATGGAGCGACAAGCAGAACTCAAGAGGAAGTTTGAACAGCTTAAACAGGAAAGAATCAGCAGATATCAGGGTGTTAACTTGTACATCAAGAATCTTGATGACACCATCGATGATGAGAAACTTCGTAAAGAGTTTTCTCCTTTTGGCTCCATTACAAGTGCCAAGgtgaTGCTGGAGGAGGGCAGGTCCAAAGGTTTTGGTTTTGTGTGTTTCTCCTCTCCTGAGGAAGCCACAAAGGCTGTGACAGAGATGAATGGGCGTATTGTGGGCTCCAAACCACTATACGTAGCCCTAGCTCAACGTAAAGAAGAGCGCAAAGCTCATCTGACCAACCAGTACATGCAGCGGATTGCCGGTATGAGGGCCATGCCTGCCAATGCCATCATCAACCAGTTCCAGCCTGCCGGCGGATACTTCATGCCAGCCGTGCCACAGGCCCAGAACAGAACAACATACTATGCACCAAACCAGCTCACCCAGATGCGTCCAAACCCGCGCTGGCAGCAGCAGGGTGGCAGAGGTCAGGGTGGTTTCCAGGGCATGCCCAGCTCCTTACGCCAGCCAGGGCCCCGGGCTAACATTCGCCACCTGGCACCCAATGCTTCCAACCAAGGCCCACGCGGGATGCCCACAGGTGCACAGAGAGTGGGAGGGACTGGCCAACCGATGGGTCCCCGTCCTGCCATGGGGATGACGACCCCACGTGCCATGCCACCATACAAATATGCCTCCACCATCCGAAACACTCAGCCTCAGGTAGTGCAGCCCATCGCTCTGCAGCAGGCTCAGCCGGCTGTTCATGTTCAGGGTCAGGAGCCTCTCACTGCCTCCATGTTAGCTGCTGCTCCTCCTCAGGAACAGAAACAGATGCTTGGTGAGCGTTTGTTCCCTCTTATCCAGGCGATGCATCCCAGTCTAGCTGGAAAAATCACAGGAATGCTGCTCGAAATCGACAACTCTGAGCTGCTGCACATGCTGGAGTCCCATGAGTCTCTGCGCTCTAAG

Function

symbol description
pabpc4 Predicted to enable mRNA 3'-UTR binding activity; poly(A) binding activity; and poly(U) RNA binding activity. Predicted to be located in cytoplasm. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasmic stress granule; cytosol; and nucleus. Is expressed in eye; musculature system; solid lens vesicle; and somite. Orthologous to several human genes including PABPC4 (poly(A) binding protein cytoplasmic 4).

GO:

id name namespace
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0010494 cytoplasmic stress granule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008143 poly(A) binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0008266 poly(U) RNA binding molecular_function
GO:0003730 mRNA 3'-UTR binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9663 Predicted to enable mRNA 3'-UTR binding activity; poly(A) binding activity; and poly(U) RNA binding activity. Predicted to be located in cytoplasm. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasmic stress granule; cytosol; and nucleus. Is expressed in eye; musculature system; solid lens vesicle; and somite. Orthologous to several human genes including PABPC4 (poly(A) binding protein cytoplasmic 4).

Ensembl:

ensembl_id ENSDARG00000059259

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023903 False 4220 mRNA 0.44 14 25303671 25326296
TCONS_00023904 True 2204 mRNA 0.50 12 25308166 25326685
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Neighbor

gene id symbol gene type direction distance location
XLOC_012125 ppie coding downstream 185 25296982 ~ 25303486 (-)
XLOC_012124 NA coding downstream 57061 25244438 ~ 25246610 (-)
XLOC_012123 NA coding downstream 106070 25188611 ~ 25197601 (-)
XLOC_012122 zgc:193593 coding downstream 364826 24917350 ~ 24938845 (-)
XLOC_012121 si:ch211-195o20.7 coding downstream 386782 24891756 ~ 24916889 (-)
XLOC_012127 zpcx coding upstream 1666 25328351 ~ 25331447 (-)
XLOC_012128 lck coding upstream 18049 25344734 ~ 25382376 (-)
XLOC_012129 fam167b coding upstream 65839 25392524 ~ 25397558 (-)
XLOC_012130 NA coding upstream 186239 25512924 ~ 25522751 (-)
XLOC_012131 rtn4ip1 coding upstream 223550 25550235 ~ 25563847 (-)
XLOC_012107 NA non-coding downstream 985100 24307366 ~ 24318571 (-)
XLOC_012106 NA non-coding downstream 1001982 24296350 ~ 24301689 (-)
XLOC_012105 NA non-coding downstream 1083989 24203699 ~ 24219682 (-)
XLOC_012132 NA non-coding upstream 258802 25585487 ~ 25586858 (-)
XLOC_012133 si:ch211-214p16.2 non-coding upstream 260940 25587625 ~ 25588430 (-)
XLOC_012140 BX000364.3 non-coding upstream 537620 25864305 ~ 25864419 (-)
XLOC_012141 NA non-coding upstream 566737 25893422 ~ 25897784 (-)

Expression

Expression of XLOC_012126(pabpc4) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.

Expression of XLOC_012126(pabpc4) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.

Co-expression Network