CI01000206_00220974_00253610


Basic Information

Item Value
gene id CI01000206_00220974_00253610
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000206
NCBI id null
chromosome length 757353
location 220974 ~ 253610 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000206_00220974_00253610.mRNA
ATTCATATCCAGGGTTGAGGAGGTGCTCAATGACTGGAAGCTGATTGGTTGTCGTGTTGGGAAACCACCGGAGAAGGGCGAATACACCAGCAGCAGCTGGGAAGAGACGTGTCAAGAGATTAACTTCGCTGATTTCAAGTTCTCCATTACACATCACTGTCTGAAACAGGAGTCAGCAGATAGTGAAGGCAGGGATGAACCAGAGGAAGATGCGTATCCGCTGGCCATGCAGGACCTGCTCTGCATGAACAATGACTTTCCTCCTCGAGCTCACTGTCTGGTCAGATGGTATGGTATGCGTGAGTTTGTGGTGATTTCTCCTGGAGCAAACTGTGAAGCCATCGTCAGTGAGTCCAAGTGTAACCTGCTGCTGAGCTCCGTGTCCATCGCTCTGGCCAACACAGGCTGCCACGTGCCGCTGTTTGTACAGATCCAGCAGAAATGGAGGAGGATGTACACGGGCGAGTGTCAGGGGCCCGGCGTCCGCTCCGACTTTGAGATGGTGCATCTGCGCAAAGCACCCAGCCAGTACAACCACCTGTCCGGCCTGCTCGACATCTTCAAGAACAAGATTGTGAGTTCAGATGATGAGCGATCGGTCTTAGGTTTTCAGAGCATGTTAACACACAGAGATCATGCTGATCAGGGCTGCCCACTGACGCCGCTGCCGCCCATCAACATTGCCATTCGCTTCACGTACGTCCTTCAGGACTGGCAGCAGTGCTCGTGGCCTCAGCAGCCGCCAGGTGGCACTGACCCCAAACTCCTCATGGATTACATCACTTCCATTCAGAACGACAAAGCATTGCCAAGACGTTGCCTCAACGATCTGGATCCACTTCAGGCGCCTCACTGGTCCGTTCGAGTGCGGAAAGCAGACAACCCGCAGTGTTTGCTGGGTGAGTTTCTCATGGAGTTCTTCAAACTTTGCTGTCGGAAGGAAACCACGGAGGAGATTCTGGGGAGGAACTCGGTTGAAGAGGAAGGGAAAGAGAACAGTGACATCACTCAAGCCTTGTCGAAACTGACGGAGCCGGCTGCTGTTCCCATCCACAAGCTGTCTGTCTCCAACATGGTTCACAGCGCACGCAAGCGCATACGGCGACACAGACGAGTCGAGGAGTCGCCTCTTAACAACGACGTGCTGAACTCCATCCTGCTGCATCTCTATAATCAGCTGAAATCGGCTCCGTGCGACAGTCTGACGTACCGTCTGGCCTTGTGCATCTGTATGGTGAACTTCCATCACGGAGGAGTGCGCGCTGTCGCTCACCTGTGGCAGGAGTTCGTGTTGGAGATGCGCTACCGCTGGGAAAACAACTGCCTGATCTACGGACTGGCGAGTGGCCCTCCTGATCTCAGGTGTTGTCTTCTTCATCAGAAGCTGCAGATGCTGAACTGCTGCATTGAGCGCAAGAGAGCAAGGGATGATGGGAGGAAGAACACCACATCAGATGGAAGCCGAGACAAAAACCGCCTGGGGCCGGAGAGCACGGGACCACCAACCGGACCTGCTGAAGTTTCTCCCGGGAAATCGTGGGACTCGTGGAGTGACAGTGAAGAGGAGTTCTTTGAGTGTCTGAGCGACACGGAGGAGATGAAGGAGGCGGAGACAGACAGTGAGAAAAAAACAGCCAATAAGAGCAAACCAGAAGGTCGACTGCAGCCGCACGGCAAACTCACACTGCTGAACTCACAGGAGCCGCTCTACATCCCCGTCACACAGGAGCCCGCGCCCATGACTGAAGACCTGCTGGAGGAGCAGTCGGAGGTGCTGGCCAAACTGGGCACGTCCGCTGAAGGTGCCCATCTCCGTGCCCGCATGCAGAGCGCCTGCCTGCTCTCAGACATGGAGTCATTTAAGGCAGCGAATCCAGGCTGTTCCCTGGAGGATTTTGTGCGCTGGTATTCCCCGAGAGATTACGTGGAGGAGGAAGTGAGCGATGAGGCAGGCCAGACGGTCGTTCGGGGTGAACTGAGCGCCCGCATGAAGATCCCGGGCAACATGTGGGTTGAGGCCTGGGAAACGGCCAAAGCCACGCCAGCTCGCCGACAGAAGAGGCTGTTTGATGACACCAAAGAGGCTGAGAAGGTGCTGCACTACCTGTCGGTGCAGAAAGCGTCTGATCTGACGAGGCATCTGCTGCCCTGCGTCCTACACGCTGCTCTTCTCAAAATCAAGGAAGAAGAGTCGACTGAAGACATCCCGTCCGTGCGTAAGGCTCTCCAGCAGCTCACCTCTCATGCCAGTAAACTGCTGCGTTACCCCAGCCCCGACTTCAAGAAAATGGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000206_00220974_00253610.mRNA True 2293 mRNA 0.55 17 220974 253610

Neighbor

gene id symbol gene type direction distance location
CI01000206_00178241_00202393 NA coding upstream 17389 178145 ~ 203585 (+)
CI01000206_00029745_00051502 NA coding upstream 169053 29745 ~ 51921 (+)
CI01000206_00021515_00023628 NA coding upstream 197341 21515 ~ 23633 (+)
CI01000206_00385497_00393583 R3HDM1 coding downstream 131887 385497 ~ 393583 (+)
CI01000206_00426915_00452327 NA coding downstream 173184 426794 ~ 453106 (+)
CI01000206_00475810_00481198 LCP1.S, LCP1 coding downstream 222200 475810 ~ 481222 (+)
CI01000206_00537962_00541275 NA coding downstream 284279 537889 ~ 542150 (+)
CI01000206_00571550_00572992 NA coding downstream 317940 571550 ~ 573289 (+)
G389642 NA non-coding upstream 62065 157555 ~ 158909 (+)
G389597 NA non-coding upstream 74766 142077 ~ 146208 (+)
G389632 NA non-coding upstream 86397 99628 ~ 134577 (+)
G389623 NA non-coding upstream 150820 69585 ~ 70154 (+)
G389594 NA non-coding upstream 166609 54138 ~ 54365 (+)
G389658 NA non-coding downstream 41873 295483 ~ 295961 (+)
G389672 NA non-coding downstream 73351 326961 ~ 327166 (+)
G389684 NA non-coding downstream 90178 343788 ~ 344204 (+)
G389728 NA non-coding downstream 251907 505517 ~ 505814 (+)
G389753 NA non-coding downstream 257319 510929 ~ 511157 (+)
G389767 NA other downstream 307535 561145 ~ 565669 (+)
G389725 NA other downstream 326221 579831 ~ 583898 (+)
G389774 NA other downstream 352725 606335 ~ 608065 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_038217 rab3gap1 coding NC_007120.7 CM002893.2 56336873 ~ 56399699 (-)
bowfin (Amia calva) AMCG00000870 rab3gap1,LOC106586310 coding CM030137.1 CM030137.1 6232529 ~ 6252770 (+)