Fish Transcriptome and Expression Database

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model fish

XLOC_012140 (BX000364.3)

Basic Information

Item	Value
gene id	XLOC_012140
gene name	BX000364.3
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007128.7
NCBI id	CM002901.2
chromosome length	53461100
location	25864305 ~ 25864419 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023928
CCCAGTATCTAGTTCTCTGCAGcgctcacatggtcgcccactgaagtcAAGCAGGGCTGCACCTAGTCAGTATCTTGATGGAagactacatgggaaagctaggttgctgttggat

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000113485

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00023928	True	115	rRNA	0.51	1	25864305	25864419

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_012139	BX000364.4	coding	downstream	2518	25861193 ~ 25861787 (-)
XLOC_012138	AL929023.1	coding	downstream	16754	25821388 ~ 25847551 (-)
XLOC_012137	hhat	coding	downstream	32736	25777330 ~ 25831569 (-)
XLOC_012136	si:ch211-214p16.3	coding	downstream	126853	25649939 ~ 25737452 (-)
XLOC_012135	ppp1cb	coding	downstream	215226	25635953 ~ 25649079 (-)
XLOC_012141	NA	coding	upstream	29003	25893422 ~ 25897784 (-)
XLOC_012142	NA	coding	upstream	89091	25953510 ~ 25955190 (-)
XLOC_012143	ccser2a	coding	upstream	613192	26477611 ~ 26538075 (-)
XLOC_012144	fam149b1	coding	upstream	725460	26589879 ~ 26604946 (-)
XLOC_012145	mrpl57	coding	upstream	744091	26608510 ~ 26610862 (-)
XLOC_012133	si:ch211-214p16.2	non-coding	downstream	275875	25587625 ~ 25588430 (-)
XLOC_012132	NA	non-coding	downstream	277447	25585487 ~ 25586858 (-)
XLOC_012130	NA	non-coding	downstream	341554	25512924 ~ 25522751 (-)
XLOC_012124	NA	non-coding	downstream	617695	25244438 ~ 25246610 (-)
XLOC_012123	NA	non-coding	downstream	666704	25188611 ~ 25197601 (-)
XLOC_012147	AL928908.2	non-coding	upstream	919507	26783926 ~ 26802736 (-)
XLOC_012151	NA	non-coding	upstream	1085993	26950412 ~ 26968341 (-)
XLOC_012152	AL928908.3	non-coding	upstream	1117616	26982035 ~ 26985759 (-)

Expression

Co-expression Network