XLOC_012141


Basic Information

Item Value
gene id XLOC_012141
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 25893422 ~ 25897784 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023929
atcaggggtcgacacaacggaatgaaccacctccATTTCTCCATCTTTCGGCTAATTTTCCATCCATTCTACAGATCGCAGCACTGCAGAGCTAGAATAAGGATACCAGCCTGTCAACACTACTGTCAACAGCTTCTGACTGGAAGGTGAGGTTAGCGGAGAGGATTACCAGGACTACCCTCCCCTACATTCAGGATATTGCACCACAGTGAACGCTTATCCCGGACCAGAAATATTCTAAAGGGTGCTACTCACCCCCACCAGGGACTATTCTTCCCATTAACTTCTGGGAAGAGGTAAACAGCATTAAATGCAGTACAGGTTCTGTAGAAGCTTTCTGCCACTGGCCATCAGAATGTTAAACTCTTAAAGGgtcacaatgtatttatttatgtttattttcttagttttttttttttttactttaaaacttataTGCACTATTGTAATTTGAACTCACTATATATACTGCACTCAATTTATATGTGCTCAACATAACTGAGTACACCTCATttcgaaaatgaatatttttttaatcaatttctcagtgaatatcattcatattttggtgcatttgaacaatcagatttatttaaataatattttagtaacatcttcagaaatagaaagataataaatttcaattcatgcaaaatattggggAAGAAATTTGCAAATTACAAAGTTTCaactaaatgtatacatttttctgtttctcttgaattttgggCAAATATCATAAGTCATTTTGTTCGATTATCTCCGGATTTGGGTTTAGTAGTGACCAATCCaatgtatgtgcacaaatataatactgtgaaGCTTCCTATACAAAAATTTTCacttaaatgagagatttgtgagaggtTTTCTTATATATGCTGTGCACTGTGGAGCCAATGCTACAACATTTGTTCGGAGTATATACATGTGAATGATAATAAAGTACTTGACTTGTTTTCTCAAAACATCTCACCTCTTTTCATCATTTTTCACTTGCTGCCAACAGGCAGTCATGTTTAAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023929 True 1025 lncRNA 0.35 2 25893422 25897784

Neighbor

gene id symbol gene type direction distance location
XLOC_012140 BX000364.3 coding downstream 29003 25864305 ~ 25864419 (-)
XLOC_012139 BX000364.4 coding downstream 31635 25861193 ~ 25861787 (-)
XLOC_012138 AL929023.1 coding downstream 45871 25821388 ~ 25847551 (-)
XLOC_012137 hhat coding downstream 61853 25777330 ~ 25831569 (-)
XLOC_012136 si:ch211-214p16.3 coding downstream 155970 25649939 ~ 25737452 (-)
XLOC_012142 NA coding upstream 55726 25953510 ~ 25955190 (-)
XLOC_012143 ccser2a coding upstream 579827 26477611 ~ 26538075 (-)
XLOC_012144 fam149b1 coding upstream 692095 26589879 ~ 26604946 (-)
XLOC_012145 mrpl57 coding upstream 710726 26608510 ~ 26610862 (-)
XLOC_012146 calm1a coding upstream 815327 26713111 ~ 26721007 (-)
XLOC_012133 si:ch211-214p16.2 non-coding downstream 304992 25587625 ~ 25588430 (-)
XLOC_012132 NA non-coding downstream 306564 25585487 ~ 25586858 (-)
XLOC_012130 NA non-coding downstream 370671 25512924 ~ 25522751 (-)
XLOC_012124 NA non-coding downstream 646812 25244438 ~ 25246610 (-)
XLOC_012147 AL928908.2 non-coding upstream 886142 26783926 ~ 26802736 (-)
XLOC_012151 NA non-coding upstream 1052628 26950412 ~ 26968341 (-)
XLOC_012152 AL928908.3 non-coding upstream 1084251 26982035 ~ 26985759 (-)
XLOC_012158 NA non-coding upstream 1504859 27402643 ~ 27403751 (-)

Expression


Co-expression Network