CI01000208_00479959_00498664


Basic Information

Item Value
gene id CI01000208_00479959_00498664
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000208
NCBI id null
chromosome length 699623
location 479145 ~ 499471 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000208_00479959_00498664.mRNA
CCATAAAATAGACTAAAATTAGTGCTTCATCGTTATGACAATAAAATACAATGTAAGGGTGCTTCAACATGTATTATATGCTTTTTCAAACAAATATGTTTTTAACTTAGATTTAAAAACAGATAAAGATGAAGCCAGTCTAATCGAAATGGGCAAGTCATTCCAGAGTCTAGGGCCAACTACGGAAAAAAAGGTCCCCCCTACATTTTAACCTTGATTTAGGGATAGACGAGTCTCTGATTAGATGACCGAAGTGATCTTGTTGGATGGTGCTCAGTCAAAAGTGTGGAAAGGTAAGGTGGAGCCATAAATGACATAATTTTCATTTTTGGGTGAACTAACCCTTTAACATTGAGCAGATGACAGTCTGTTGATCGCGTGAATGCAGTGATCTTGTCATTGCAACACAATTTCACACTCTCACGAAATGCTTTTACCGTAACTAACAATGCAAACATGATGTAAATACAGTAAGAGAATCATTATGTAGTGTAAGAGTGTAATATAAAATTTTGGCAAGTGTCCAGATAAACTCGCGCTGCGTGATTGACAGCTTCAGCCATTATAAAGAGAGCGTTCTTTGAAGTATAAATACTAGGATTAGGCAAAAGTTTTTGGGCAAAGCCAGTCTCCTATTGTGATTTGTTCTCAAAACAGCCGCTGGTAAAATGTACAGTACAAACATATGAGTCAGCACTGACGTGACTAGGACGTTTGTTAAAAATAAACTGAATCCATTTTTCTCTGACATCAGGATCCTTCGGCAGTTTATGCAAAGATGTTTCTCCACAGCCAGGAACAACACAACATCTGCATGGCATCGCAATCTTGTTATTATCACACAGCTTTAGATCCACTCGCTTCTCATGGACTGAACATCAGTGGAAAGGGACAACGATGCGATGATGAAAGACCAAAACCCAAAGTGATCATTAAACCTGATCAACATGTATTCAGTGGAGAGACAGTCACTCTCAGATGTGACATTGATGTTGAAGGAGTCACTAGATGGCGGTACAACTGGTATAAAGAAGGTTCAACCAGTGTTTTCAGTGAACTACAGGAACACACATTCAGGTCTGTTAATGAGTCTGATGCAGGTAAATACTCCTGTAATGGATCAGACACTGAAGGATCACGCAGATCAAACATCAGTGATGAAGTTACACTGACAGTATCAGACAAAAACACTGAGAGTTGTGACGTCCTGTACTCTAAACTGAAGCTGGAAACAGATCAAGACTTCAGAAATCATTATAAGCTGCTCTCAGACAGCAGCAGAGGAGCTGGAGGAAAATACACTGTCAGTTCTGCTACTCTAAATCACACTGGAGTTTATATGTGTGGAGCAGAGAGAGAAAAAACAGCCTATAAAACATTGTACAGCAACAGACAACCACTGTGGGTCACTGGTGTTTCTCCTCGAGTCTCTCTAATCATCAGTCCCAGCAGAACTCAACACTTCTCATCTGTCTCTCTCTCTCTGAGCTGTGAGGACCAGAGTAACTCTGATGGATGGACAGTCAGAAGATACACAGACCGTTGGGGGCGGCTGGAAGATTGTTCATCACCAGTGTTTGGATCACAAACAGGATCTACATGTACAATCAACAACACCATCACATCAGACACTGGAGTGTACTGGTGTCAGTCTGAATCTGGAGAGAAATATCATCCTGTTAATATCACTGTACGCTTTGGTGTGATTCTGGAGAGTCCTGTTCATCCTGTGACTGAAGGAGATACTCTGACTCTACGCTGTTTAGATCAGTTTGCAGACCCATCAATCGTCAGAGCTGATTTCTATAAAGATGGATCACTCATCCAGAATCAAACTACAGAGATGATCATCTCTACTGTCTCAAAGTCACATGAGGGTTTCTACTAGATACTCTGACTCTACGCTGTTTAGATCAGTTTGCAGACCCATCAATCGTCAGAGCTGATTTCTATAAAGATGGATCACTCATCCAGAATCAAACTACAGAGATGATCATCTCTACTGTCTCAAAGTCACATGAGCAGTTACACTGACAGTATCAGGTGAGTTTGATCATCTCTTCATAAACACACACAAGTTTATCATGTTATTAATGAGAGATTTGCTTCTTCATATTAAGATACTTTTTTAACCAAAATTGTCTCACATGATCTTCAAATCAAGTCTCAAAGTTGGCTGGATTTTTTAATTTTTCACCAAATAACACCCTAAAAAGTAGTCATGATGTATCTTAATGATTTTTATTACTGAATTTTATTTATTTATTTGCATTTCACATATTTGAATACATCTAAACAAGTTGTCAAATAGACACTATGTTTATAAGTCACATATTTCAGTTCTAAATATCTTCATTCTCTCCTAAAAACTACAATCTGTGACACAACAACAGTAGTGTTTGTATAATTATTGTGGGTTTGCTCGTCCATCATGACACTCGCTGTGAGAAATGCTGCAGTGATACAAACAGTGAAACGGTTCCCATGGTGATACTGGTAGAATATCTGGAAAAGGCTCTCAGCCAATCAGATTCAAGAACCAGAACGAACTGTTGTATAAATAAATATACACTGTTGAGGGTTAAACAAAATATTAATGGTTAAACAAATCAAATAATTTCCTGCCTTTATAACTTATATTTTTAAGGCCTATATATAAAGTATATTTAGGGTTCGCTCTTTTTAAAGACATTAA
>TU447215
CAACATTCTAACAATTCAAAGCAGGTTGAAATCAACAAAGTTCCACTTTAAGGTGAAATCTACACATTCTCTTATTTTACAGACTTCAGAAATCATTATAAGCTGCTCTCAGACAGCAGCAGAGGAGCTGGAGGAAAATACACTGTCAGTTCTGCTACTCTAAATCACACTGGAGTTTATATGTGTGGAGCAGAGAGAGAAAAAACAGCCTATAAAACATTGTACAGCAACAGACAACCACTGTGGGTCACTGGTGTTTCTCCTCGAGTCTCTCTAATCATCAGTCCCAGCAGAACTCAACACTTCTCATCTGTCTCTCTCTCTCTGAGCTGTGAGGACCAGAGTAACTCTGATGGATGGACAGTCAGAAGATACACAGACCGTTGGGGGCGGCTGGAAGATTGTTCATCACCAGTGTTTGGATCACAAACAGGATCTACATGTACAATCAACAACACCATCACATCAGACACTGGAGTGTACTGGTGTCAGTCTGAATCTGGAGAGAAATATCATCCTGTTAATATCACTGTACGCTTTGGTGTGATTCTGGAGAGTCCTGTTCATCCTGTGACTGAAGGAGATACTCTGACTCTACGCTGTTTAGATCAGTTTGCAGACCCATC

Function

NR:

description
leukocyte immune-type receptor TS32.15 L1.1a, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000208_00479959_00498664.mRNA False 2695 mRNA 0.38 6 479145 499471
TU447215 True 626 TUCP 0.43 3 497603 498561

Neighbor

gene id symbol gene type direction distance location
CI01000208_00388124_00395613 DNAJA3, DNAJA3A coding upstream 83224 387628 ~ 395921 (+)
CI01000208_00314910_00326888 NA coding upstream 152240 313308 ~ 326962 (+)
CI01000208_00298383_00300398 VASNB coding upstream 178190 298054 ~ 300955 (+)
CI01000208_00269407_00286854 NA coding upstream 192114 269236 ~ 289336 (+)
CI01000208_00249095_00260113 NA coding upstream 218676 248618 ~ 260469 (+)
CI01000208_00508002_00511190 NA coding downstream 7677 507148 ~ 511257 (+)
CI01000208_00533761_00535474 NA coding downstream 34140 533611 ~ 535474 (+)
CI01000208_00554756_00555762 NA coding downstream 55098 554569 ~ 558695 (+)
CI01000208_00571370_00591616 CCNF coding downstream 71899 571370 ~ 592484 (+)
CI01000208_00611303_00616477 NA coding downstream 111832 611303 ~ 616800 (+)
G390621 NA non-coding upstream 19727 458666 ~ 459418 (+)
G390634 NA non-coding upstream 21164 456197 ~ 457981 (+)
G390632 NA non-coding upstream 25990 439332 ~ 453155 (+)
G390628 NA non-coding upstream 59364 416406 ~ 419781 (+)
G390676 NA non-coding upstream 148213 330663 ~ 330932 (+)
G390729 NA non-coding downstream 49255 548726 ~ 549309 (+)
G390737 NA non-coding downstream 53189 552660 ~ 552867 (+)
G390749 NA non-coding downstream 172418 671889 ~ 672382 (+)
G390620 NA other downstream 160127 679966 ~ 680035 (+)
CI01000208_00479959_00498664 NA other downstream 11901 479145 ~ 499471 (+)

Expression


Co-expression Network