CI01000208_00554756_00555762


Basic Information

Item Value
gene id CI01000208_00554756_00555762
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000208
NCBI id null
chromosome length 699623
location 554569 ~ 558695 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000208_00554756_00555762.mRNA
ACATATATAGCAGTGCTCATTCTGTCTGCTCGAGTGTTCAACGTGCTGCTGTGGGCTTGAGAGGCAGAGCACTGTGTCACTGACAAACCCACAGACATTGTGAGAGTATCTTCACATCCATAAATTGCATTTCCTCTCTTCAGCGCATCCTCTCTTGTTGTTGTGTTTCCTGCATCCTGGCTTTAAGATGGGATGTACCACAGGGCACTTCACCTGCCAACCGCAGACAACGGCAGCCCCAACCCTGGAGGGACAGTCACAAGAAGGAGGGCCCAAAGTCCCTGAGGTCCTTTCATCCCTAGAGAGGCTTTCGCAAGCCACGGGAGGGATGGAGAAGTCCTGGTACCGCTGCATCTTTCCCTTCGGGATCATCTCGTTGGTGATTGGAGTTGCCGGAACTGGGGTGACGTACACGTATAACGATCTCCCGCAGACCAAGGTGGTGTCCGTGTTCCTTCTGATCGCGGGGCTGATCCTGGTACTGATGGCGACCGCTTGCTGGACGGCCCATAAGAAGAAGCGTAGGAAAAAGAAGGAAGGAGGTTCCTTCAGCTCCGAACAGTGTCCCCTGTGGCCGAAGACAGGCCCTCTCAGAGAATCCCATGGAAAATACGGCGCAGGCCGGCATGAAGGTTCGCCGGAGTCATGCACGCAGTTTACCGTCGCTCAGCAGGTGTCTGGATGGACTGGAGAGACAAGACACCTGCTCGGCCTCTTTCGCTGTCAACCCTCTGTCAATCGTAGCCGCTAATGATTTAGGACAAGGGTGCAGCACCTGATATTAAGGACACAAAGAAATTGATTTATTGGGGATTTTACACAGTGTACAATGTGTTGAAGGAGTTTTGCATTGGATTGTGTGTTTGTGTGTGTGTGCATGTGATTCTAGCTGGCAAATTCAGGACTCTTCATGGACCTCATATAGGCGGTATTCGGAAAAACAACCGCAGAGGAATTTTATAACGACACGGTTCAGAGAAAGGCAAGCAAGCCGAAAGCAATTTGTTCTGAGACGGCCTGAAAAGAAAATTCATTTCCTGTCAGACAGATGAGCAGGATTACTGGGGGGGGGGGGTGCCACAAGATGCCACAAGGGTACACGAAAAGTGTCTGTAAAGTTTTGTTCTTGTTCCAGTGCCTTGAGCAAGCGTTAGGACTTAGCATGGTACAGCTCTGTTTTACCCCTCTGTCTTTCTTTTCCTCTTCCAGTGCCAGTTTTAAAACTCAAACTCAGCTATTTTAGCAATGTTCTCCTCGCCCCCAAAAACAACACACATGAATATGTCGTCACCTTGACCTGGTCAGAGCCCACAAAGGCTGGAGCTTACATCCGTTTTCACAATGGGAACACCGCTTATTCACACTGCCTTGATCAGGGAAGCATTTGGCATGTTTTGCTGACAGATAATGAATTAAAAATGAAAGTTCTTTAATTATTTACTCACCCTCATGTTCTTCCAAATCTGTATGACATATTTACTTCTGTTGAAGACAAAACTCAGTGGGATACAAAACAACACTTTTTATGCTCATTGAATGAAAAAAAAAAAAAAAACGCAGCAGAAGGAAAGTCATACTGATTTGGAACCACATGAGGGTGAGTAAATGACAGAATTTTCCTTTTTGGAAAAGTTTAGCCTTCAAATGTCCTATAAAAAACTGTGTGAAGAATAACATTTGGAGATTCGGAGGTTAATAATTATCGATCGAGATGTTTTGACCATGTTGAGGAGTAGATTTGAGAATCCTTGTGCATAAGAGAAAGAAAAGAAACAGAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGAGGGTGAGTAAATGACAGAATTTTCCTTTTTGGAAAAGTTTAGCCTTCAAATGTCCTATAAAAAACTGTGTGAAGAATAACATTTGGAGATGGACAAAAAATCCATACCAATTCGGAGGTTAATAATTATCGATCGAGATGTTTTGACCATGTTGAGGAGTAGATTTGAGAATCCTTGTGCATAAGAGAAAGAAAAGAAACAGAGAGAGAGAGAGGATTAACAACCTTGAGTACTTA
>TU447206
CGTGCTGCTGTGGGCTTGAGAGGCAGAGCACTGTGTCACTGACAAACCCACAGACATTGTGAGAGTATCTTCACATCCATAAATTGCATTTCCTCTCTTCAGCGCATCCTCTCTTGTTGTTGTGTTTCCTGCATCCTGGCTTTAAGATGGGATGTACCACAGGGCACTTCACCTGCCAACCGCAGACAACGGCAGCCCCAACCCTGGAGGGACAGTCACAAGAAGGAGGGCCCAAAGTCCCTGAGGTCCTTTCATCCCTAGAGAGGCTTTCGCAAGCCACGGGAGGGATGGAGAAGTCCTGGTACCGCTGCATCTTTCCCTTCGGGATCATCTCGTTGGTGATTGGAGTTGCCGGAACTGGGGTGACGTACACGTATAACGATCTCCCGCAGACCAAGGTGGTGTCCGTGTTCCTTCTGATCGCGGGGCTGATCCTGGTACTGATGGCGACCGCTTGCTGGACGGCCCATAAGAAGAAGCGTAGGAAAAAGAAGGAAGGAGGTTCCTTCAGCTCCGAACAGTGTCCCCTGTGAGAGCATCTGCAAAAGTGACGGAAAATAGACCCTTCTTTTTATTTTCACCAAAATCCTCGTCCGCTCAGGTGGCCGAAGACAGGCCCTCTCAGAGAATCCCATGGAAAATACGGCGCAGGCCGGCATGAAGGTTCGCCGGAGTCATGCACGCAGTTTACCGTCGCTCAGCAGGTGTCTGGTATCAAAACAAGCCTGGAGAGGACACACATCCCCGCATGCACACACACAGGACACTCAACACTAACTGCGAGCCACTGCTGCCGTCAACGCTGCTGTCAGTCCTCCTGCATTCCTGTGACGAGCGAAGAAGCGGGCCAGCGGCGGCAACCGGACACCGCGGCGAAAGAGGAGTTCACCTCCGTCACCATCGCACGTCATTCGCCTGTCCAGTGACACCGTAGCAATGTGTGAGCTTTTTTACGGAGTGGAACTTGAACCTGTGTCTGCTGGCTAGAACCGGCAGCTGCGGATCAGGATAGGAAGAGAGCGCGGATCGGAGAGGTCGAGAATGTGTCCGTCTGAGTGTGTGTGTGTGGAATATGTGTGCAGGATGGACTGGAGAGACAAGACACCTGCTCGGCCTCTTTCGCTGTCAACCCTCTGTCAATCGTAGCCGCTAATGATTTAGGACAAGGGTGCAGCACCTGATATTAAGGACACAAAGAAATTGATTTATTGGGGATTTTACACAGTGTACAATGTGTTGAAGGAGTTTTGCATTGGATTGTGTGTTTGTGTGTGTGTGCATGTGATTCTAGCTGGCAAATTCAGGACTCTTCATGGACCTCATATAGGCGGTATTCGGAAAAACAACCGCAGAGGAATTTTATAACGACACGGTTCAGAGAAAGGCAAGCAAGCCGAAAGCAATTTGTTCTGAGACGGCCTGAAAAGAAAATTCATTTCCTGTCAGACAGATGAGCAGGATTACTGGGGGGGGGGGGTGCCACAAGATGCCACAAGGGTACACGAAAAGTGTCTGTAAAGTTTTGTTCTTGTTCCAGTGCCTTGAGCAAGCGTTAGGACTTAGCATGGTACAGCTCTGTTTTACCCCTCTGTCTTTCTTTTCCTCTTCCAGTGCCAGTTTTAAAACTCAAACTCAGCTATTTTAGCAATGTTCTCCTCGCCCCCAAAAACAACACACATGAATATGTCGTCACCTTGACCTGGTCAGAGCCCACAAAGGCTGGAGCTTACATCCGTTTTCACAATGGGAACACCGCTTATTCACACTGCCTTGATCAGGGAAGCATTTGGCATGTTTTGCTGACAGATAATGAATTAAAAATGAAAGTTCTTTAATTATTTACTCACCCTCATGTTCTTCCAAATCTGTATGACATATTTACTTCTGTTGAAGACAAAACTCAGTGGGATACAAAACAACACTTTTTATGCTCATTGAATGAAAAAAAAAAAAAAAACGCAGCAGAAGGAAAGTCATACTGATTTGGAACCACATGAGGGTGAGTAAATGACAGAATTTTCCTTTTTGGAAAAGTTTAGCCTTCAAATGTCCTATAAAAAACTGTGTGAAGAATAACATTTGGAGATGGACAAAAAATCCATACCAATTCGGAGGTTAATAATTATCGATCGAGATGTTTTGACCATGTTGAGGAGTAGATTTGAGAATCCTTGTGCATAAGAGAAAGAAAAGAAACAGAGAGAGAGAGAGGATTAACAACCTTGAGTACTTAATAAAAGCATTTTTTGAGGCATTTGGCTGTTAGCATGTGCTAAGCTCGGACTTGTTTGAGCCCAGAAGATTTTATTGCTCTTTCATAGCTCAGGAGAGTTAATGGATTCCTCAGTCGTGTTCAACTTAGGAGAGAAATAAAAGCTCTAGAAATAAATGTTCATATTAGGAACTCTGACTTTTGATCGCAAATCTGAGCAGTTGGTGACATTTTTGAGAAAGCACATGAGATTGGGTCTTTTTCTCCATTTGCCCTCCATTTAATCTCATTGCCAAAAACATTTTGAGATATTTATGAGATCTTATCTGTGATTAAATAGACATGTAAGTTTGAGGTTATGGTTATTGTAACTAGAAACAGAAGTTTCTGGAGTGAATGCGTGCGCATGGCATGCAACACAGCGGTTCTGCACTTGGGGCACGTCCAGATGGAATTGATTTTTAACAGTGACGTCTGACCACATGGCTAGGGATAAACACAGTGCCTTTTTATTGACTGATGTACGTGCTTTAAAGCTGCCTTTGCCTCCTTTAGTATTTTTTTTATTGCTTTACACTAGAATGTGGTTTTTGTCCCTTTACAAAAATAGATTGCCTTTATTGTGTTTTTCCACAGCGTGCTACAAAAAGCAGCGAAGGGAGTGCAGCTAGAGTTTCCAACTGCATTTTAAACACTGTTCACAATGCTCTTAACTGCAAGCAGACGAGAATCAGGCTAAATCAGGGATGAAGTTGGTGTTTAAGTGGGAAAAGGACCAGATGAGATCCCTTGGGATATCAGCGACTGACCCTAATGGAGCGTCTGATTGTATCATGGAAAGCCAGTAATCCAAGATATCTGTTTACATGATCAAATCAAGATCAGACGTTCAGATCTGAGTCATCGGAAAAACATGGTACTGTTCTCCCCCGACCCCCCCCAAAAAAACGTAATTTTTTTTTTTTAATATATATAATACAGTTTTTTGGCCTTTCCATGTGATTGTTTCCATGCATATTTGGAAGTAGCTGTGCGCATGATTTCCTCCAGTTTTCAGATTTTCTTCAGCCCTTTTACAAGAGCTGGAAGGAGGGAGATTTATAGAGGGTGAACACATTTACTGAGTTGTGCAATTTCATTGAAAAGACGTGAGCAGAATGTCACGGCTGCATGTGTGGAATGCACAGTCAAACATATTGGGACCATATATTAAGTATATATACTTAGCTTCGTTTATCGCCTTACAGTCTTCTGTTGTACATAAATCCACATCTGTACCCCCATTGTACTGACCTGGGCTGCGTTTCTCAAAAGCATTGTGAACTAAGTTGATCGTAGAAATTATTGGTGGCAATTATTCTACGATCTACTAAGGCTTACGAGGTGCGCAGCCCTGACCATGCAGTTTTGTTCTTTAAACTTGCTCTTGTTTCATGTTGAAAGTTGTTGTGAATGAGTGAGTCGTCAATGAATATCTGTTCTACTGTTTCATATTTTGGAATGAGAAAGAGTAAATCTACCTCTCTAGTTCTGAGAGAGTGTTTTCGCCATCCTTACATTCTCCAGAATGCTTTTTCTCTTAAGCTGGAGGCAACAAATGCCAAAATCTGTATTCTGTG
>TU447207
CGTGCTGCTGTGGGCTTGAGAGGCAGAGCACTGTGTCACTGACAAACCCACAGACATTGTGAGAGTATCTTCACATCCATAAATTGCATTTCCTCTCTTCAGCGCATCCTCTCTTGTTGTTGTGTTTCCTGCATCCTGGCTTTAAGATGGGATGTACCACAGGGCACTTCACCTGCCAACCGCAGACAACGGCAGCCCCAACCCTGGAGGGACAGTCACAAGAAGGAGGGCCCAAAGTCCCTGAGGTCCTTTCATCCCTAGAGAGGCTTTCGCAAGCCACGGGAGGGATGGAGAAGTCCTGGTACCGCTGCATCTTTCCCTTCGGGATCATCTCGTTGGTGATTGGAGTTGCCGGAACTGGGGTGACGTACACGTATAACGATCTCCCGCAGACCAAGGTGGTGTCCGTGTTCCTTCTGATCGCGGGGCTGATCCTGGTACTGATGGCGACCGCTTGCTGGACGGCCCATAAGAAGAAGCGTAGGAAAAAGAAGGAAGGAGGTTCCTTCAGCTCCGAACAGTGTCCCCTGTGAGAGCATCTGCAAAAGTGACGGAAAATAGACCCTTCTTTTTATTTTCACCAAAATCCTCGTCCGCTCAGGTGGCCGAAGACAGGCCCTCTCAGAGAATCCCATGGAAAATACGGCGCAGGCCGGCATGAAGGTTCGCCGGAGTCATGCACGCAGTTTACCGTCGCTCAGCAGGTGTCTGGTATCAAAACAAGCCTGGAGAGGACACACATCCCCGCATGCACACACACAGGACACTCAACACTAACTGCGAGCCACTGCTGCCGTCAACGCTGCTGTCAGTCCTCCTGCATTCCTGTGACGAGCGAAGAAGCGGGCCAGCGGCGGCAACCGGACACCGCGGCGAAAGAGGAGTTCACCTCCGTCACCATCGCACGTCATTCGCCTGTCCAGTGACACCGTAGCAATGTGTGAGCTTTTTTACGGAGTGGAACTTGAACCTGTGTCTGCTGGCTAGAACCGGCAGCTGCGGATCAGGATAGGAAGAGAGCGCGGATCGGAGAGGTCGAGAATGTGTCCGTCTGAGTGTGTGTGTGTGGAATATGTGTGCAGGATGGACTGGAGAGACAAGACACCTGCTCGGCCTCTTTCGCTGTCAACCCTCTGTCAATCGTAGCCGCTAATGATTTAGGACAAGGGTGCAGCACCTGATATTAAGGACACAAAGAAATTGATTTATTGGGGATTTTACACAGTGTACAATGTGTTGAAGGAGTTTTGCATTGGATTGTGTGTTTGTGTGTGTGTGCATGTGATTCTAGCTGGCAAATTCAGGACTCTTCATGGACCTCATATAGGCGGTATTCGGAAAAACAACCGCAGAGGAATTTTATAACGACACGGTTCAGAGAAAGGCAAGCAAGCCGAAAGCAATTTGTTCTGAGACGGCCTGAAAAGAAAATTCATTTCCTGTCAGACAGATGAGCAGGATTACTGGGGGGGGGGGGTGCCACAAGATGCCACAAGGGTACACGAAAAGTGTCTGTAAAGTTTTGTTCTTGTTCCAGTGCCTTGAGCAAGCGTTAGGACTTAGCATGGTACAGCTCTGTTTTACCCCTCTGTCTTTCTTTTCCTCTTCCAGTGCCAGTTTTAAAACTCAAACTCAGCTATTTTAGCAATGTTCTCCTCGCCCCCAAAAACAACACACATGAATATGTCGTCACCTTGACCTGGTCAGAGCCCACAAAGGCTGGAGCTTACATCCGTTTTCACAATGGGAACACCGCTTATTCACACTGCCTTGATCAGGGAAGCATTTGGCATGTTTTGCTGACAGATAATGAATTAAAAATGAAAGTTCTTTAATTATTTACTCACCCTCATGTTCTTCCAAATCTGTATGACATATTTACTTCTGTTGAAGACAAAACTCAGTGGGATACAAAACAACACTTTTTATGCTCATTGAATGAAAAAAAAAAAAAAAACGCAGCAGAAGGAAAGTCATACTGATTTGGAACCACATGAGGGTGAGTAAATGACAGAATTTTCCTTTTTGGAAAAGTTTAGCCTTCAAATGTCCTATAAAAAACTGTGTGAAGAATAACATTTGGAGATTCGGAGGTTAATAATTATCGATCGAGATGTTTTGACCATGTTGAGGAGTAGATTTGAGAATCCTTGTGCATAAGAGAAAGAAAAGAAACAGAGAGAGAGAGAGGATTAACAACCTTGAGTACTTAATAAAAGCATTTTTTGAGGCATTTGGCTGTTAGCATGTGCTAAGCTCGGACTTGTTTGAGCCCAGAAGATTTTATTGCTCTTTCATAGCTCAGGAGAGTTAATGGATTCCTCAGTCGTGTTCAACTTAGGAGAGAAATAAAAGCTCTAGAAATAAATGTTCATATTAGGAACTCTGACTTTTGATCGCAAATCTGAGCAGTTGGTGACATTTTTGAGAAAGCACATGAGATTGGGTCTTTTTCTCCATTTGCCCTCCATTTAATCTCATTGCCAAAAACATTTTGAGATATTTATGAGATCTTATCTGTGATTAAATAGACATGTAAGTTTGAGGTTATGGTTATTGTAACTAGAAACAGAAGTTTCTGGAGTGAATGCGTGCGCATGGCATGCAACACAGCGGTTCTGCACTTGGGGCACGTCCAGATGGAATTGATTTTTAACAGTGACGTCTGACCACATGGCTAGGGATAAACACAGTGCCTTTTTATTGACTGATGTACGTGCTTTAAAGCTGCCTTTGCCTCCTTTAGTATTTTTTTTATTGCTTTACACTAGAATGTGGTTTTTGTCCCTTTACAAAAATAGATTGCCTTTATTGTGTTTTTCCACAGCGTGCTACAAAAAGCAGCGAAGGGAGTGCAGCTAGAGTTTCCAACTGCATTTTAAACACTGTTCACAATGCTCTTAACTGCAAGCAGACGAGAATCAGGCTAAATCAGGGATGAAGTTGGTGTTTAAGTGGGAAAAGGACCAGATGAGATCCCTTGGGATATCAGCGACTGACCCTAATGGAGCGTCTGATTGTATCATGGAAAGCCAGTAATCCAAGATATCTGTTTACATGATCAAATCAAGATCAGACGTTCAGATCTGAGTCATCGGAAAAACATGGTACTGTTCTCCCCCGACCCCCCCCAAAAAAACGTAATTTTTTTTTTTTAATATATATAATACAGTTTTTTGGCCTTTCCATGTGATTGTTTCCATGCATATTTGGAAGTAGCTGTGCGCATGATTTCCTCCAGTTTTCAGATTTTCTTCAGCCCTTTTACAAGAGCTGGAAGGAGGGAGATTTATAGAGGGTGAACACATTTACTGAGTTGTGCAATTTCATTGAAAAGACGTGAGCAGAATGTCACGGCTGCATGTGTGGAATGCACAGTCAAACATATTGGGACCATATATTAAGTATATATACTTAGCTTCGTTTATCGCCTTACAGTCTTCTGTTGTACATAAATCCACATCTGTACCCCCATTGTACTGACCTGGGCTGCGTTTCTCAAAAGCATTGTGAACTAAGTTGATCGTAGAAATTATTGGTGGCAATTATTCTACGATCTACTAAGGCTTACGAGGTGCGCAGCCCTGACCATGCAGTTTTGTTCTTTAAACTTGCTCTTGTTTCATGTTGAAAGTTGTTGTGAATGAGTGAGTCGTCAATGAATATCTGTTCTACTGTTTCATATTTTGGAATGAGAAAGAGTAAATCTACCTCTCTAGTTCTGAGAGAGTGTTTTCGCCATCCTTACATTCTCCAGAATGCTTTTTCTCTTAAGCTGGAGGCAACAAATGCCAAAATCTGTATTCTGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000208_00554756_00555762.mRNA False 2086 mRNA 0.43 3 554569 557097
TU447206 False 3831 TUCP 0.44 2 554610 558695
TU447207 True 3810 TUCP 0.44 2 554610 558695

Neighbor

gene id symbol gene type direction distance location
CI01000208_00533761_00535474 NA coding upstream 19095 533611 ~ 535474 (+)
CI01000208_00508002_00511190 NA coding upstream 43312 507148 ~ 511257 (+)
CI01000208_00479959_00498664 NA coding upstream 55098 479145 ~ 499471 (+)
CI01000208_00388124_00395613 DNAJA3, DNAJA3A coding upstream 158648 387628 ~ 395921 (+)
CI01000208_00314910_00326888 NA coding upstream 227664 313308 ~ 326962 (+)
CI01000208_00571370_00591616 CCNF coding downstream 14273 571370 ~ 592484 (+)
CI01000208_00611303_00616477 NA coding downstream 54206 611303 ~ 616800 (+)
CI01000208_00622771_00646633 ABCA3B, ABCA3 coding downstream 65674 622771 ~ 647166 (+)
CI01000208_00655853_00657320 NA coding downstream 96916 654013 ~ 657529 (+)
CI01000208_00659672_00669637 CYP2K21, CYP2K19, CYP2K18 coding downstream 102534 659598 ~ 669655 (+)
G390737 NA non-coding upstream 1702 552660 ~ 552867 (+)
G390729 NA non-coding upstream 5260 548726 ~ 549309 (+)
G390631 NA non-coding upstream 51428 475836 ~ 503141 (+)
G390621 NA non-coding upstream 95151 458666 ~ 459418 (+)
G390749 NA non-coding downstream 114792 671889 ~ 672382 (+)
G390620 NA other downstream 102501 679966 ~ 680035 (+)

Expression


Co-expression Network