XLOC_012144 (fam149b1)


Basic Information

Item Value
gene id XLOC_012144
gene name fam149b1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 26589879 ~ 26604946 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023933
AGCTAGAGCACCTTGGTCTCCATGACAGTCTTGTTATTGTTGTTCAGCAGATAATCATGGATTGATGAAGAATACAGCTGATTTCCACCTcaataaacatttctaaaaactCCGTCGACGAAATGGTGGAGTAGTCCGACTTTTTGTTTCATGTTCGCGGACGGGTTTTTCTCGCCCACACCAGGTTTGTCAGTTCAGGCTCGGCCCAGTGCAGTGCTGGATGCTGCATATTTTCTCACATTTTTCTGAGCTGTGATACATTCTGTGTGGTCGGACTGTGGGTGAAGCATGAGAGACCAGCGGTGGTGCAGCGGCCCGGTCCGGACACTGGAGGCTCGGAGTCGGATCACAGGCTCACAGACGGAGGAGATGCGTATGCTGTAACAGCATCAGGAGGATGATTTCTCGATACAGCCGTCGGCCTGTATCTCACAACCTAGAGATTCGTGGTTTGTCCCGCAGTTGTCTGGACCAGCATCCTCTTCCAGAGGAGGCAGACAATGGTACTGCGCATTCCTCCAGACTCCTGCACAATCTACAGGAGGACATGTCCTTATACAGCAGGTCTGAGGAGTCCTCTGCATCATCCGTCAGATCAGGATGTCAGACACTCACCACAGATGACACTGTTCCGTCTTGGTCTGGTATCCATAGTTACACAGGAACTGGCATCTCGACAGAACGCAGCTCTGTCTTCTCGTGGGGCTACGATGAATTTGATAAAGCCGCTTCCAGGCAGGTCCAGCAGATGTTTGAAGAGATTGACGAACTGTTGTATGAAAGAAAGTGTGAAACTCAGCTTAAAGGACTCCAAGATGAGTGTCAAGAGTGGGCTTTCCGATTCCCTCATCTGCGGATTCTTGGAACGCAGGTGGTATGTCCTACAGATGAAGGATTCCAGTGGTATGCCACGCCAGCTCAGACCCCCAGCCCCTCTAGCAGCTTCCAGAGCAAAGAGAACACTGTCAGCGAGTTGTATGTTCAGGGTCGGAGGGCGGTTTTGTGTCGGCCCACTGTGGAGGTGACCAACACCAGTATTAAAACCAGTGGTAACAATGAAGATGAGCTGCCCAGTGTGATCGAGGCCGAAGGGCTAATAGAAGAGTATCTGGCCTACGACTGCAGAGACATGGATGAAGAATGTGAACGTGAGTATGTGAGCAGACGGAGGAGGCGGAGGCGGTGCCTGCCCCCTGTCTCACCCTATCGATGTCGTCAGGAGGCGGTGCTTGATCTGCTGTTTGACGACGTATGGCGTGAGCTCATTGGCTGGATAGAGGAGCTTGTACGTAAACACTGGGATGGATATGTGTTAGATGATGAGAAGAGTACCGTGGCCCTCAGCCCTAAATGTCCTGATCCTCAGAATCCATTCATGCTGCTGTCCAATGTCTCCACCGTGCTTCCTCCTCTTTCACAGACCAGAACACAACAGCTCACGACAAACTTGCAGGCCCAGACCAGTCGAGTGCCTGTAGGACCGGCGGTTGCTCATCACAATCTTAATGACCTCATCATGATACATGGCATTCCACTGCAGCAAAGGAACCTGGGAACTCTGGACCGATTAAATCAGTCTGACTGTAGGGACTCTGAGGACAAAGTGTCTCATCGTCCTGGCTCTAGTGTGATCCCTGCCGGTAAACCCCGGCCCCGCAGGGCACTGGATCAAAGCACTTCATCTTTGACTCGCCCCCCTCAGTCTGCACGGCGACGGAACCCACCTCCTCGAAATCTGATGCCAATTACGTCCAGCGTAACACAGCCAATCACAACCATGGAGGAGGTGGTCAGAGGCACTAGACTgacAACTCCCAGTGATCGTTTGACTTCACCTCCAATGCATCTCAGTAGAAACACACTCCTTCCTCCCATTGGCACAGGAGACATAGACCATGTATACTCCGGACAACACACACGGCTTATACAGAAGCAGAGAGGATCCTCCAGTCGTGCACACAGTGCAGTGACAGATGAGGGTATCAGTCTGCAGCCCAGAGACAAACTACATCTGCTGGACGTGTTTTCCAGACCCAACACCACACACACCTTTAGGTCAGACACCCCTTATCACCGTTCATTCACTGGGATAGACAACATCGGGCAGGGTCGACCTGGCAGGGCATCTGTTGGCGTAGATTCTCTGGGAATTGGTGTGACTGGAATCAGTTTGGGCATCAGCAGCTCCTCCTTTATAGACTCATTTTCCCATCATCCAATGGGCCATTTCCCAATCGGGCACGAGGAGGAGCCAGATGCAAAAGCCTCAGGTCAAGCACGCTCGCATAACAGAGGTGGTTCAACGGCACGCAGTAGCAGACCAGGGCTTTAACACAAACAcgtaaacacagacacacacacaaaatccccCTTAGCTTCTTGAACCAAACTCACCTCAGCACTGACGCAACTTTTCTTCAGTACTGACAGACACTTTGTAAGTCTGCTGGACTTTTGTATGACGCGCTGTTTGAGCGTGGACCTTATTTATGACcgctgttgttattaatattattattattagtagtagtattgttattcaTGTTGTTGTTTGAAATTTTCTAAAACCCTATTTTTGTATATTGGACTATTCAGCTTCATATGGCTGCCAAATACAGGAAACTGTCTATCCCTTACATCTGCAGATGTACTGTACATGCTGTACTGTATGGAGTAACAACTTTTGGTTTTCTCTTAAGATGGCTCTGTGAGGCCTCCATGGAGTTTCTATGCAGGTTCATAAAAGCAGGGAGTTTAAATAGCCAGAATGTTGCCCGCACCGGAGTGTTCGAGACCCTTTTTGGATCGTGGAACCTGCTATGGAAGATTTATACTGTCTGTATTCTAGACGGATGTTTCATCGTGATGCAATTCCAACCACTTTATATCCACGATCTTGGACCATAGGTGTGTAAGAATTCTTCGTTTTGTATCATGATTCCGTGATCGTGGAATGTTCAATAGCAATTGTAACATCCGAAAGGACTCTAAGGTCTTATTTCCAGCAGTGTAAACCGCAATGAATGGTTTTTCAGAGAAAAACACTGATATTCTGGAAGCATACCCGCAATATGAGGGTGGGCCGATACATTAGTACAGCCTACATAATGACAGGTGAAA
>TCONS_00023934
ATGATTTCTCGATACAGCCGTCGGCCTGTATCTCACAACCTAGAGATTCGTGGTTTGTCCCGCAGTTGTCTGGACCAGCATCCTCTTCCAGAGGAGGCAGACAATGGTACTGCGCATTCCTCCAGACTCCTGCACAATCTACAGGAGGACATGTCCTTATACAGCAGGTCTGAGGAGTCCTCTGCATCATCCGTCAGATCAGGATGTCAGACACTCACCACAGATGACACTGTTCCGTCTTGGTCTGGTATCCATAGTTACACAGGAACTGGCATCTCGACAGAACGCAGCTCTGTCTTCTCGTGGGGCTACGATGAATTTGATAAAGCCGCTTCCAGGCAGGTCCAGCAGATGTTTGAAGAGATTGACGAACTGTTGTATGAAAGAAAGTGTGAAACTCAGCTTAAAGGACTCCAAGATGAGTGTCAAGAGTGGGCTTTCCGATTCCCTCATCTGCGGATTCTTGGAACGCAGGTGGTATGTCCTACAGATGAAGGATTCCAGTGGTATGCCACGCCAGCTCAGACCCCCAGCCCCTCTAGCAGCTTCCAGAGCAAAGAGAACACTGTCAGCGAGTTGTATGTTCAGGGTCGGAGGGCGGTTTTGTGTCGGCCCACTGTGGAGGTGACCAACACCAGTATTAAAACCAGTGGTAACAATGAAGATGAGCTGCCCAGTGTGATCGAGGCCGAAGGGCTAATAGAAGAGTATCTGGCCTACGACTGCAGAGACATGGATGAAGAATGTGAACGTGAGTATGTGAGCAGACGGAGGAGGCGGAGGCGGTGCCTGCCCCCTGTCTCACCCTATCGATGTCGTCAGGAGGCGGTGCTTGATCTGCTGTTTGACGACGTATGGCGTGAGCTCATTGGCTGGATAGAGGAGCTTGTACGTAAACACTGGGATGGATATGTGTTAGATGATGAGAAGAGTACCGTGGCCCTCAGCCCTAAATGTCCTGATCCTCAGAATCCATTCATGCTGCTGTCCAATGTCTCCACCGTGCTTCCTCCTCTTTCACAGACCAGAACACAACAGCTCACGACAAACTTGCAGGCCCAGAGCTCAAAGTCATGGGGTTCAAAGCACAAGTCAAGACGGAAATCCAAAAAGCAGAGAAAGTCATCGACTACCAGTCGAGTGCCTGTAGGACCGGCGGTTGCTCATCACAATCTTAATGACCTCATCATGATACATGGCATTCCACTGCAGCAAAGGAACCTGGGAACTCTGGACCGATTAAATCAGTCTGACTGTAGGGACTCTGAGGACAAAGTGTCTCATCGTCCTGGCTCTAGTGTGATCCCTGCCGGTAAACCCCGGCCCCGCAGGGCACTGGATCAAAGCACTTCATCTTTGACTCGCCCCCCTCAGTCTGCACGGCGACGGAACCCACCTCCTCGAAATCTGATGCCAATTACGTCCAGCGTAACACAGCCAATCACAACCATGGAGGAGGTGGTCAGAGGCACTAGACTgacAACTCCCAGTGATCGTTTGACTTCACCTCCAATGCATCTCAGTAGAAACACACTCCTTCCTCCCATTGGCACAGGAGACATAGACCATGTATACTCCGGACAACACACACGGCTTATACAGAAGCAGAGAGGATCCTCCAGTCGTGCACACAGTGCAGTGACAGATGAGGGTATCAGTCTGCAGCCCAGAGACAAACTACATCTGCTGGACGTGTTTTCCAGACCCAACACCACACACACCTTTAGGTCAGACACCCCTTATCACCGTTCATTCACTGGGATAGACAACATCGGGCAGGGTCGACCTGGCAGGGCATCTGTTGGCGTAGATTCTCTGGGAATTGGTGTGACTGGAATCAGTTTGGGCATCAGCAGCTCCTCCTTTATAGACTCATTTTCCCATCATCCAATGGGCCATTTCCCAATCGGGCACGAGGAGGAGCCAGATGCAAAAGCCTCAGGTCAAGCACGCTCGCATAACAGAGGTGGTTCAACGGCACGCAGTAGCAGACCAGGGCTTTAA

Function

symbol description
fam149b1 Human ortholog(s) of this gene implicated in Joubert syndrome. Orthologous to human FAM149B1 (family with sequence similarity 149 member B1).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-2102 Human ortholog(s) of this gene implicated in Joubert syndrome. Orthologous to human FAM149B1 (family with sequence similarity 149 member B1).

Ensembl:

ensembl_id ENSDARG00000061215

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023933 False 3120 mRNA 0.49 15 26589879 26604946
TCONS_00023934 True 2004 mRNA 0.52 16 26590667 26604549

Neighbor

gene id symbol gene type direction distance location
XLOC_012143 ccser2a coding downstream 51804 26477611 ~ 26538075 (-)
XLOC_012142 NA coding downstream 634689 25953510 ~ 25955190 (-)
XLOC_012141 NA coding downstream 692095 25893422 ~ 25897784 (-)
XLOC_012140 BX000364.3 coding downstream 725460 25864305 ~ 25864419 (-)
XLOC_012139 BX000364.4 coding downstream 728092 25861193 ~ 25861787 (-)
XLOC_012145 mrpl57 coding upstream 3564 26608510 ~ 26610862 (-)
XLOC_012146 calm1a coding upstream 108165 26713111 ~ 26721007 (-)
XLOC_012147 AL928908.2 coding upstream 178980 26783926 ~ 26802736 (-)
XLOC_012148 si:dkey-221l4.10 coding upstream 245178 26850124 ~ 26874040 (-)
XLOC_012149 rcan3 coding upstream 274779 26879725 ~ 26926577 (-)
XLOC_012133 si:ch211-214p16.2 non-coding downstream 1001449 25587625 ~ 25588430 (-)
XLOC_012132 NA non-coding downstream 1003021 25585487 ~ 25586858 (-)
XLOC_012151 NA non-coding upstream 345466 26950412 ~ 26968341 (-)
XLOC_012152 AL928908.3 non-coding upstream 377089 26982035 ~ 26985759 (-)
XLOC_012158 NA non-coding upstream 797697 27402643 ~ 27403751 (-)
XLOC_012163 BX465838.4 non-coding upstream 1925521 28530467 ~ 28530582 (-)

Expression


Co-expression Network