XLOC_012145 (mrpl57)


Basic Information

Item Value
gene id XLOC_012145
gene name mrpl57
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 26608510 ~ 26610862 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023935
AGTTCACCAGCCAGCAGAGCGCACTGTACTGTGACCGCCGGTGCTGTAGGAGGCGCTACAACCAACAGCCCCCTGAGTCTGACATTCACAGAATCCGTCTGCTTGCGGCATGCTGGCCGTGGATTTGAAGACGAAATTATCTTTACTCTCGTAGCCCTTCACTAGCTTGAGAATGTTCTTGACTCTAGCACTGTTGCGGAAGGGGATTCCAGGAAAGCAGTGGATTGGGAAGTATCGACGACCACGACCTGTTACCTGGCAGATAAAGCGGAATGTGATCAAACGGCTAGAACAAGAAGCAGAGAATGAATACTGGATCAGCCGGCCATTCATGACGCTGGAACAGGAGCGAGGCCACGCAGCACAGAGGCGAGAGTGGATGTGGCAGCAAATCAAAGCTGAGCGACAAGCCAAGTTTCCTGAACACAAATACATCGCAGACCAACTGAACCACCTAAGGGTCACCAAGACCTGGCCCAGCTAACCAGAACATCACAGACTGATGGATATCTGATGGATGGAGATGAAATCATACTAGTTTTTGTCTTTGATATTTGCTCTGTTGTACatctgtgtgtttctgtttatAAATGATTTCTAATCATCACA
>TCONS_00023936
GGAGGCGCTACAACCAACAGCCCCCTGAGTCTGACATTCACAGAATCCGTCTGCTTGCGGCATGCTGGCCGTGGATTTGAAGACGAAATTATCACTGTTGCGGAAGGGGATTCCAGGAAAGCAGTGGATTGGGAAGTATCGACGACCACGACCTGTTACCTGGCAGATAAAGCGGAATGTGATCAAACGGCTAGAACAAGAAGCAGAGAATGAATACTGGATCAGCCGGCCATTCATGACGCTGGAACAGGAGCGAGGCCACGCAGCACAGAGGCGAGAGTGGATGTGGCAGCAAATCAAAGCTGAGCGACAAGCCAAGTTTCCTGAACACAAATACATCGCAGACCAACTGAACCACCTAAGGGTCACCAAGACCTGGCCCAGCTAACCAGAACATCACAGACTGATGGATATCTGATGGATGGAGATGAAATCATACTAGTTTTTGTCTTTGATATTTGCTCTGTTGTACatctgtgtgtttctgtttatAAATGATTTCTAATCATCA
>TCONS_00023937
AGTCTGACATTCACAGAATCCGTCTGCTTGCGGCATGCTGGCCGTGGATTTGAAGACGAAATTATGTAAGTAATTTATTGTGCTTCTCAGTAATATTATATAAACTAGTGATGCTCATCTTTAGATATTTGTTCTTAGGAGTACATTGGTTGTGTATCGCCTGAACAGTTTTACTCGCTTACTCGCTTTTTACCTGCATAGTTGTGTATGATGTACTCTAGGATTCATTTAAACGTGTTACAATGCTAATGCGACTTATTAGATATTTAAAACGGAGGTTAGATCATGCTATCTTTAAACTTTGCTTGTTAATCTGTTTAATATGCTGTTGATTTGATGTCTTTGCCATTTAATGTCAAGGTCAGAATTATCTTTTAGCAGTTCACGAGTAAGTTAATAAGTCTACATTTGATAGGTTCACGTGTGTATTGTTTATGGGTTTAAAGACATCAGCACGAATAACAAAATCTACTGTTTAAGACTGAGTAGGCATTCCCAAGAATATACATAGACATGAGTGCATTGTGAATGTCATTTTAAAGGGATGGCTCATCctctatccatccacccattgtATTTACATCATGCAATACATTGATTTTCATCTCATTGGTATTTAATGGCaatttagatatttaaattttAGAATTAGTAAAATGGTGTTAAAACTAATCCACATTTCTGATGAATATTGTTCATCAAGCAGTACATAAGGAAACAGAATATGGAATTTCTAATAAGTCCATCGTTCCTTAAAGAAAGACaccataattaatattaataaacgcATATTATGATTCAGTTGCTAAAACTGACTATTGGCTCCCATGAtggcatttttaattaaaaa

Function

symbol description
mrpl57 Predicted to be a structural constituent of ribosome. Predicted to be located in mitochondrion and ribosome. Predicted to be active in mitochondrial ribosome. Orthologous to human MRPL57 (mitochondrial ribosomal protein L57).

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005761 mitochondrial ribosome cellular_component
GO:0005840 ribosome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1745 Predicted to be a structural constituent of ribosome. Predicted to be located in mitochondrion and ribosome. Predicted to be active in mitochondrial ribosome. Orthologous to human MRPL57 (mitochondrial ribosomal protein L57).

Ensembl:

ensembl_id ENSDARG00000007285

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023935 False 609 mRNA 0.49 2 26608510 26610862
TCONS_00023936 False 511 mRNA 0.48 2 26608512 26610814
TCONS_00023937 True 850 lncRNA 0.33 2 26609651 26610787

Neighbor

gene id symbol gene type direction distance location
XLOC_012144 fam149b1 coding downstream 3564 26589879 ~ 26604946 (-)
XLOC_012143 ccser2a coding downstream 70435 26477611 ~ 26538075 (-)
XLOC_012142 NA coding downstream 653320 25953510 ~ 25955190 (-)
XLOC_012141 NA coding downstream 710726 25893422 ~ 25897784 (-)
XLOC_012140 BX000364.3 coding downstream 744091 25864305 ~ 25864419 (-)
XLOC_012146 calm1a coding upstream 102249 26713111 ~ 26721007 (-)
XLOC_012147 AL928908.2 coding upstream 173064 26783926 ~ 26802736 (-)
XLOC_012148 si:dkey-221l4.10 coding upstream 239262 26850124 ~ 26874040 (-)
XLOC_012149 rcan3 coding upstream 268863 26879725 ~ 26926577 (-)
XLOC_012150 nipal3 coding upstream 317556 26928418 ~ 26935339 (-)
XLOC_012133 si:ch211-214p16.2 non-coding downstream 1020080 25587625 ~ 25588430 (-)
XLOC_012132 NA non-coding downstream 1021652 25585487 ~ 25586858 (-)
XLOC_012151 NA non-coding upstream 339550 26950412 ~ 26968341 (-)
XLOC_012152 AL928908.3 non-coding upstream 371173 26982035 ~ 26985759 (-)
XLOC_012158 NA non-coding upstream 791781 27402643 ~ 27403751 (-)
XLOC_012163 BX465838.4 non-coding upstream 1919605 28530467 ~ 28530582 (-)

Expression


Co-expression Network