XLOC_012146 (calm1a)


Basic Information

Item Value
gene id XLOC_012146
gene name calm1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 26713111 ~ 26721007 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023938
CTCTGCGAGCGTCAGTTGCACGGTGGAGCTTTAACGGAGAGCGGAGCATCGCTGCAGTCTAGAGTAGATTAACAAACCCAGTCCACTCTCCACCCTCAGACATGGCTGACCAACTCACCGAGGAGCAAATTGCAGAGTTTAAGGAGGCTTTCTCCTTATTTGATAAGGATGGTGATGGTACTATCACCACCAAGGAGCTGGGCACAGTGATGCGCTCGCTCGGACAGAACCCCACAGAAGCTGAACTCCAGGACATGATAAACGAGGTGGACGCTGATGGTAACGGAACCATTGACTTTCCTGAATTTCTGACAATGATGGCCCGGAAAATGAAAGACACAGACAGCGAGGAGGAGATCCGCGAAGCTTTCCGAGTGTTTGACAAGGACGGGAACGGCTACATCAGTGCGGCAGAGCTTCGCCATGTCATGACAAACCTGGGTGAGAAACTAACAGATGAAGAGGTGGATGAAATGATCAGAGAAGCTGACATCGACGGTGACGGTCAGGTCAATTACGAAGAATTTGTACAAATGATGACGGCAAAGTGAAGCTCTTCTGTTTTCTCCTGACCTCtttagaagacaaaaaaaaaatcagtcaaatGTTTTACTTACCTCTTAcgcaaaaatattcatttattcatactgtTTCTGTATAGAAAAAAACTGAATGTTGAAAAAAGGAAAATGTCcatatatagaaaaaaatatatttaaaaacacaaaaacaaaaaaagacataacCAAACATAAATGACCTGCATGTACTGGTTAGTGGTCCTGTTCCCAAAGAACTGCTTAGACATCTACGAAAAAGATCAATCAATTAATCCTGATATCGAACCTTCAGAAACTAAAGTAAAAGCATCTGGTGAACTGCTTAACTGGTTCCATTTGCTAGTGGTGATGTTTGGGCTGGCCAATCGTCTTCTACTTCCTGTTTCTGTTTTACATGCATGCAGCTTGAGTCTGGAGCCGCTATTGGGGCGGAAAACCTCAGCGATGTCTGTCGGAGCGTTCTGGGGGAGAATTTTAAAAGAGGGTTGACTGGTTTCGGGGGAGGCGGGATCGGGTGGAGGGTGGTTTTTCTGAATCTGCATAGTGGACGAATGAATGGGACCTTTGCAGTTTGCTTCAATAACTAAATAAagagatatttttaagaaaaatgaGCAGTTAAGAGATTTTAAACTACGTTTGGCATGTCAGGATATTTGGAGTTTTGTTTCTTTGTGCATTGTGCCCGATAGTAGGGGCGTTTAGCGGGAGGGAGTGGCTTGGGAGTTTCAGGGCGTGACCTTTCACCTTATGTGGAAGTGTTTTTTCGGGTAAGGGCAACGGTGACTGACTGtaccattaaaatgtttttaatctttAGTTCTTCTCTGGGCTCTGATCGTGAGCATgtcgaattattattattttgtttttttctctctggaGAGCGCGAAAGAGGGCTTTTGGCCACCAGGGGTTTGTTTCGACTGCCCACCTTCAGTTCTGTTTATGTTCATTCCAAGTTGTACATGCTcgtcttttgatttttttttccaataaaagAACATGAACTTGAA
>TCONS_00023939
ATGGCTGACCAACTCACCGAGGAGCAAATTGCAGAGTTTAAGGAGGCTTTCTCCTTATTTGATAAGGATGGTGATGGTACTATCACCACCAAGGAGCTGGGCACAGTGATGCGCTCGCTCGGACAGAACCCCACAGAAGCTGAACTCCAGGACATGATAAACGAGGTGGACGCTGATGGTAACGGAACCATTGACTTTCCTGAATTTCTGACAATGATGGCCCGGAAAATGAAAGACACAGACAGCGAGGAGGAGATCCGCGAAGCTTTCCGAGTGTTTGACAAGGACGGGAACGGCTACATCAGTGCGGCAGAGCTTCGCCATGTCATGACAAACCTGGGTGAGAAACTAACAGATGAAGAGGTGGATGAAATGATCAGAGAAGCTGACATCGACGGTGACGGTCAGGTCAATTACGAAGAATTTGTACAAATGATGACGGCAAAGTGA
>TCONS_00023940
AGTTGCACGGTGGAGCTTTAACGGAGAGCGGAGCATCGCTGCAGTCTAGAGTAGATTAACAAACCCAGTCCACTCTCCACCCTCAGACATGGCTGACCAACTCACCGAGGAGCAAATTGCAGAGTTTAAGGAGGCTTTCTCCTTATTTGATAAGGATGGTGATGGTACTATCACCACCAAGGAGCTGGGCACAGTGATGCGCTCGCTCGGACAGAACCCCACAGAAGCTGAACTCCAGGACATGATAAACGAGGTGGACGCTGATGGTGAGTTGAGTTCATGACAATCAGCGATGCTGTCTGTAAGAATGTGCTATATTAAGGTTGGGGTTAAGTGTTTTTTAAAGCGTATTGTAGGCAGTCAGCACACAAACAATAGAAACGCTTTCCTGGCACATCTGTACACACAACGCTGGTTTGCAAGGCTGATTTTTGGCCTATCCTGCTCTGGTATGGTTCTACTCGAAAGCTTCCTCTACCCTATTGAGAACGGGTGTTTAAACGTTGATTAAACCGTTATC

Function

symbol description
calm1a Acts upstream of or within midbrain-hindbrain boundary morphogenesis. Is expressed in several structures, including mesoderm; midbrain neural keel; nervous system; neural tube; and trigeminal placode. Human ortholog(s) of this gene implicated in catecholaminergic polymorphic ventricular tachycardia 4 and long QT syndrome 14. Orthologous to human CALM1 (calmodulin 1).

GO:

id name namespace
GO:0021555 midbrain-hindbrain boundary morphogenesis biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8308 Acts upstream of or within midbrain-hindbrain boundary morphogenesis. Is expressed in several structures, including mesoderm; midbrain neural keel; nervous system; neural tube; and trigeminal placode. Human ortholog(s) of this gene implicated in catecholaminergic polymorphic ventricular tachycardia 4 and long QT syndrome 14. Orthologous to human CALM1 (calmodulin 1).

Ensembl:

ensembl_id ENSDARG00000021811

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023938 False 1576 mRNA 0.43 6 26713111 26721007
TCONS_00023939 False 450 mRNA 0.49 6 26714136 26719821
TCONS_00023940 True 520 processed_transcript 0.47 3 26716160 26720994

Neighbor

gene id symbol gene type direction distance location
XLOC_012145 mrpl57 coding downstream 102249 26608510 ~ 26610862 (-)
XLOC_012144 fam149b1 coding downstream 108165 26589879 ~ 26604946 (-)
XLOC_012143 ccser2a coding downstream 175036 26477611 ~ 26538075 (-)
XLOC_012142 NA coding downstream 757921 25953510 ~ 25955190 (-)
XLOC_012141 NA coding downstream 815327 25893422 ~ 25897784 (-)
XLOC_012147 AL928908.2 coding upstream 62919 26783926 ~ 26802736 (-)
XLOC_012148 si:dkey-221l4.10 coding upstream 129117 26850124 ~ 26874040 (-)
XLOC_012149 rcan3 coding upstream 158718 26879725 ~ 26926577 (-)
XLOC_012150 nipal3 coding upstream 207411 26928418 ~ 26935339 (-)
XLOC_012151 NA coding upstream 229405 26950412 ~ 26968341 (-)
XLOC_012140 BX000364.3 non-coding downstream 848692 25864305 ~ 25864419 (-)
XLOC_012133 si:ch211-214p16.2 non-coding downstream 1124681 25587625 ~ 25588430 (-)
XLOC_012132 NA non-coding downstream 1126253 25585487 ~ 25586858 (-)
XLOC_012152 AL928908.3 non-coding upstream 261028 26982035 ~ 26985759 (-)
XLOC_012158 NA non-coding upstream 681636 27402643 ~ 27403751 (-)
XLOC_012163 BX465838.4 non-coding upstream 1809460 28530467 ~ 28530582 (-)

Expression


Co-expression Network