XLOC_012147 (AL928908.2)


Basic Information

Item Value
gene id XLOC_012147
gene name AL928908.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 26783926 ~ 26802736 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023941
gaaatgtaaggCTTTTGAAAAAAGTAAAACGAATATTAAAAGGAAATAAAACTGCATTCGATGGAGGAATGCATCTTCTGTAAACTTTACAGCAAAACGAGCTGGCCATGCGTACTTGATTCTGAATGCTAACTACTAAATGCAGAAGAGACGAAAGAAAAGAAGACGATTATGGAAGTCAACCTAGCGTTTTGTACAACACAAAGACACTTCTGGTTTACTCTTTGCTTTGTGAATGCAACGGACTGACAGTTGGTCTTTGCTTTAACGGTTTTGACTGGCTCACTTCCGAGGTTTTGGGTGTAAAAGGTAAGCCTGCACCAGCATTCAAAAATCTTTCACAGCTCGAGAGTATCGCATTCAAATACTGTATATAGTGTGGTAAGGGCTTCATTTCTTTGGCTGTTGGGCTTCTTTGTTTTTGCTCGTTGCTGCCTCCGCTTTGCGAGCATCTGATGAGtgaAAGTGTTCTTGCGAGGTGCAGCAAGCTGCTCCATTTCCTCATCAAACAGGAAGTCCAGCTCCTCCTGGTCGGCTTCAGGCTGAGGCTTTGGGGTGGACTGAACCAA
>TCONS_00024910
CCGACATGCATACCAACACACAAgcgcacacaaaacaaaaatatcacaataaaatgaaaatcaGTGAACGGCACAACATTGGTTTAAAAGCAGGAACATCATGATGATgaagataatgatgatgataacacTTTTTACAATCCCTCGACTTCGGCCTGATATCTACGTACTTCTCTGATATTCAGCTCAGACACTCAGCTAATCATAAAAGCATAAAGAACTTAGTATTTCACCCCTGTCCTATTTCCTACACAAGCTAAaagagcaacaacaacaacaaaaatgcaaTAAGCTATATAGTGTGTTATCTGGTGCAACCTCAAGTTcaagttaatttttttgtttgtttgtttatttaatgagcTGCTTAAAATAAACATACTAAATATGTATGTTGTGCAGGACAGAcacaaattaaaaacacttaaaaaccAAGAAATGATTCATTATGCTGATGAAAGAGATgtaaaatatagatatattttttttgtttttgaaatgtaaggCTTTTGAAAAAAGTAAAACGAATATTAAAAGGAAATAAAACTGCATTCGATGGAGGAATGCATCTTCTGTAAACTTTACAGCAAAACGAGCTGGCCATGCGTACTTGATTCTGAATGCTAACTACTAAATGCAGAAGAGACGAAAGAAAAGAAGACGATTATGGAAGTCAACCTAGCGTTTTGTACAACACAAAGACACTTCTGGTTTACTCTTTGCTTTGTGAATGCAACGGACTGACAGTTGGTCTTTGCTTTAACGGTTTTGACTGGCTCACTTCCGAGGTTTTGGGTGTAAAAGGTAAGCCTGCACCAGCATTCAAAAATCTTTCACAGCTCGAGAGTATCGCATTCAAATACTGTATATAGTGTGGTAAGGGCTTCATTTCTTTGGCTGTTGGGCTTCTTTGTTTTTGCTCGTTGCTGCCTCCGCTTTGCGAGCATCTGATGAGGTATTCTTCTTCACATTCTCTTTGGGTGGGGCTTTTGCAGGCTGCTCATTGGCTGAGCTGCTCTTGGCGGTCAGAGGTGctggtttctgattggctgaggctGCCTTGGCAGCTGGCTGATTGGTGGATTTGGTTGCCGCTGAGGCACCAGCCTGATCATGGGCTGTTTTTGCGGTCGTCTGATTGTCTGAGGAGGTCTTGGTGATTTGGGTCTGTTTCGATGATGAAGTCGAGTTGTGTCGTCTACGTTTCACCTCATCTCCAGCGGAGGAGTGTGCTTTCCTCCTCATCCCTTCCTCTGCCATTGGTGGCTA

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0010452 histone H3-K36 methylation biological_process
GO:0044237 cellular metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097490

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023941 False 569 lncRNA 0.43 2 26783926 26801744
TCONS_00024910 True 1269 lncRNA 0.41 2 26800971 26802736

Neighbor

gene id symbol gene type direction distance location
XLOC_012146 calm1a coding downstream 62919 26713111 ~ 26721007 (-)
XLOC_012145 mrpl57 coding downstream 173064 26608510 ~ 26610862 (-)
XLOC_012144 fam149b1 coding downstream 178980 26589879 ~ 26604946 (-)
XLOC_012143 ccser2a coding downstream 245851 26477611 ~ 26538075 (-)
XLOC_012142 NA coding downstream 828736 25953510 ~ 25955190 (-)
XLOC_012148 si:dkey-221l4.10 coding upstream 47388 26850124 ~ 26874040 (-)
XLOC_012149 rcan3 coding upstream 76989 26879725 ~ 26926577 (-)
XLOC_012150 nipal3 coding upstream 125682 26928418 ~ 26935339 (-)
XLOC_012151 NA coding upstream 147676 26950412 ~ 26968341 (-)
XLOC_012152 AL928908.3 coding upstream 179299 26982035 ~ 26985759 (-)
XLOC_012141 NA non-coding downstream 886142 25893422 ~ 25897784 (-)
XLOC_012140 BX000364.3 non-coding downstream 919507 25864305 ~ 25864419 (-)
XLOC_012133 si:ch211-214p16.2 non-coding downstream 1195496 25587625 ~ 25588430 (-)
XLOC_012132 NA non-coding downstream 1197068 25585487 ~ 25586858 (-)
XLOC_012158 NA non-coding upstream 599907 27402643 ~ 27403751 (-)
XLOC_012163 BX465838.4 non-coding upstream 1727731 28530467 ~ 28530582 (-)
XLOC_012165 BX465838.1 non-coding upstream 1821312 28624048 ~ 28624176 (-)

Expression


Co-expression Network