XLOC_012148 (si:dkey-221l4.10)


Basic Information

Item Value
gene id XLOC_012148
gene name si:dkey-221l4.10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 26850124 ~ 26874040 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023942
CTGGACGAGGAACTGATCGCACAGGTGAGCCAGAATCAGCTGAAATTTACTCATTGTGTGGGATCTGCTGGCTGTCATTTGAGGGTCTCTGAGCTgcatgccttcagGAGAAGTCTGAAGATGCAGAGGGCGAGCACAGTATCTGTGACCCAGGCCACAACACAAAACACCACAGCCTTCACCAAATCTAGAGAACAAATCCTTACACAGAGCTCAGGAGCCATGATAGCTGTCATCGTCATTGGTATAATCATCATTCTCACATTTTTGCTCATAGTCCTCAAGACGTACAACAGGAGGACTCACGCAAAAAGGATGCTGTCAGGAGGCTCCAGCAAACCAAGAAAGAAAGTGTCTTCAACCACCACAAATACAAACCTGGCCATGAGCAACGTGGGCACCAGCTCAGCTTCTGGAAGCTTCATTCAGTCAAACGGATCCTCTGAAAACGGCTTCCGAATCCCTCGGGTCGACCTGGGAAACATAGACCACAGTAATGGAGAGCATTTCAGCACCAACAGCGGCTCGACCATCGTGACGATACACGACATGCCATCAGTTGATAACACATAGCAGACGTTACCTGGTCCCACACATTTGAAGATAACACACCaacatgaacaaaggacctaaGGAAAGTTTTAACTCCTGCCATCCCTGTTTAGGATCTCGTGGAACTTTGAGGAAAGTCCACTTTAAAAGAGCGTATTTATGAAGAACCTGAGGAAAACTACAGACCTGACATgattatggttttatttttagcacCGGATTTGGTGAGGAAATGTAGGCTAAAA
>TCONS_00023943
CACATCAGCTCTCTCTGTGGCCCCTTGATTTGCATGTGTACAGCAGCAGCACCAATACAACCCTGTAATGATTTATATGACATGCAGCCACAGGGAGAAAGTTAAAGAgaaatccagtgtgtgtgtgtgtgtgtttaattacaGGTGAATGCTGACTGAGAAGGGAGCGTGTAAACTGTGCTGTGAATGGGGCACGCCTTCAGGGCCAAACCAGACCTGAAAAACCAGCTAGCGCTTTCAGTCTAGTGCTCTGATATGGGACGTCAAGTTTGCCTCTCTGCCAAGAGCTGAAACCATCCTCACCAGCACAGACTCATTGCAGGCGGCTTTGCGTTTTTGTTTTTCTGTCCACGGCAGGAGAAGTGTGGACTATGTTCACTTCAGTTCACTGAAGGAGGAGGAGTGGACAGACTAATattgtggagagagagagaaaagaagctCCTGGACGAGGAACTGATCGCACAGGAGAAGTCTGAAGATGCAGAGGGCGAGCACAGTATCTGTGACCCAGGCCACAACACAAAACACCACAGCCTTCACCAAATCTAGAGAACAAATCCTTACACAGAGCTCAGGAGCCATGATAGCTGTCATCGTCATTGGTATAATCATCATTCTCACATTTTTGCTCATAGTCCTCAAGACGTACAACAGGAGGACTCACGCAAAAAGGATGCTGTCAGGAGGCTCCAGCAAACCAAGAAAGAAAGTGTCTTCAACCACCACAAATACAAACCTGGCCATGAGCAACGTGGGCACCAGCTCAGCTTCTGGAAGCTTCATTCAGTCAAACGGATCCTCTGAAAACGGCTTCCGAATCCCTCGGGTCGACCTGGGAAACATAGACCACAGTAATGGAGAGCATTTCAGCACCAACAGCGGCTCGACCATCGTGACGATACACGACATGCCATCAGTTGATAACACATAGCAGACGTTACCTGGTCCCACACATTTGAAGATAACACACCaacatgaacaaaggacctaaGGAAAGTTTTAACTCCTGCCATCCCTGTTTAGGATCTCGTGGAACTTTGAGGAAAGTCCACTTTAAAAGAGCGTATTTATGAAGAACCTGAGGAAAACTACAGACCTGACATgattatggttttattttt
>TCONS_00023944
ATCTGTGAAGCAGATGGCGAATGCAAGACACTTTAAAGAACAAACTAATAgacttaattattaaattattaattatcgTTTTATATAGGCATGCAAGTCTATTGAACGAGGGCAATAAGAGTTCATATTGATTCGATGtctataacagccatcttcgatGAAACGATAACATCGTTACCGTCATCAATTATCAAAAGACTCAAGCATACTTATACTACACCCCAAagGTAACTTGATTCCTGCTTTGGCTTATGGCTCTGGCTGACCGACTGGAAAACCCAGGAGTGAAACTCTGTCATGGGATCCCTTAGAAGAAGGACTCCCTCAGAAAGAACAAATGTCCCCTTTCTTTTATTGACGCATTTTGGTTACTAAccagGTGAATGCTGACTGAGAAGGGAGCGTGTAAACTGTGCTGTGAATGGGGCACGCCTTCAGGGCCAAACCAGACCTGAAAAACCAGCTAGCGCTTTCAGTCTAGTGCTCTGATATGGGACGTCAAGTTTGCCTCTCTGCCAAGAGCTGAAACCATCCTCACCAGCACAGACTCATTGCAGGCGGCTTTGCGTTTTTGTTTTTCTGTCCACGGCAGGAGAAGTGTGGACTATGTTCACTTCAGTTCACTGAAGGAGGAGGAGTGGACAGACTAATattgtggagagagagagaaaagaagctCCTGGACGAGGAACTGATCGCACAGGTGAGCCAGAA

Function

symbol description
si:dkey-221l4.10 Predicted to be a structural constituent of myelin sheath. Predicted to act upstream of or within regulation of myelination. Predicted to be located in Schmidt-Lanterman incisure; membrane; and paranode region of axon. Predicted to be integral component of plasma membrane.

GO:

id name namespace
GO:0031641 regulation of myelination biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0033270 paranode region of axon cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043220 Schmidt-Lanterman incisure cellular_component
GO:0019911 structural constituent of myelin sheath molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-493 Predicted to be a structural constituent of myelin sheath. Predicted to act upstream of or within regulation of myelination. Predicted to be located in Schmidt-Lanterman incisure; membrane; and paranode region of axon. Predicted to be integral component of plasma membrane.

Ensembl:

ensembl_id ENSDARG00000097934

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023942 False 797 mRNA 0.47 4 26850124 26867725
TCONS_00023943 False 1124 mRNA 0.47 4 26850158 26868169
TCONS_00023944 True 714 processed_transcript 0.44 4 26867691 26874040

Neighbor

gene id symbol gene type direction distance location
XLOC_012147 AL928908.2 coding downstream 47388 26783926 ~ 26802736 (-)
XLOC_012146 calm1a coding downstream 129117 26713111 ~ 26721007 (-)
XLOC_012145 mrpl57 coding downstream 239262 26608510 ~ 26610862 (-)
XLOC_012144 fam149b1 coding downstream 245178 26589879 ~ 26604946 (-)
XLOC_012143 ccser2a coding downstream 312049 26477611 ~ 26538075 (-)
XLOC_012149 rcan3 coding upstream 5685 26879725 ~ 26926577 (-)
XLOC_012150 nipal3 coding upstream 54378 26928418 ~ 26935339 (-)
XLOC_012151 NA coding upstream 76372 26950412 ~ 26968341 (-)
XLOC_012152 AL928908.3 coding upstream 107995 26982035 ~ 26985759 (-)
XLOC_012153 cnksr1 coding upstream 116491 26990531 ~ 27048640 (-)
XLOC_012142 NA non-coding downstream 894934 25953510 ~ 25955190 (-)
XLOC_012141 NA non-coding downstream 952340 25893422 ~ 25897784 (-)
XLOC_012140 BX000364.3 non-coding downstream 985705 25864305 ~ 25864419 (-)
XLOC_012133 si:ch211-214p16.2 non-coding downstream 1261694 25587625 ~ 25588430 (-)
XLOC_012158 NA non-coding upstream 528603 27402643 ~ 27403751 (-)
XLOC_012163 BX465838.4 non-coding upstream 1656427 28530467 ~ 28530582 (-)
XLOC_012165 BX465838.1 non-coding upstream 1750008 28624048 ~ 28624176 (-)

Expression


Co-expression Network