XLOC_012149 (rcan3)


Basic Information

Item Value
gene id XLOC_012149
gene name rcan3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 26879725 ~ 26926577 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023945
CGTATTTCTAATTGATTTTTACTTATATTCTCCGCCTGAATTTATGTTTATGCCCCTCGGATCCTAAAGTACATGGCCTGTCGCTCATGCAACGGTTCTGAATCAGTTGCAAAATAACAGGGAATAATGCGTGAGGGTGAGAAATTATGGAGCAGGAACTCGGAGGGTCACAGCAGTGATCCTGAAGAGGATGAAGAAGAGATGGCATTCGGAGACACAGAGGACGACTATGAGGAGATGATGGACTTGAGTGATTTACCTACGGCTCTGTTTGCCTGCAGCGTTCATGAGGCTGTGTTCGAGGATGACCGATACAGGGAGCGGTTTGAGGCTCTGTTTAGGATCTATGATGATCAGACGTCCTTCCAGATGTTCAAGAGCTTCAGAAGAGTTCGGATCAGCTTCAGCACTCCAGAGGCAGCTGCACGCGCTCGCATCGAGCTCCATGAATCGGATTTTAACGGCACTAAACTAAAACTCTACTTTGCACAGGTGCAGAATTCGGGAGACGATGTGGACAAGGCGTACCTGGCTCCACCTCAGCCGGTCAAGCAGTTTCTCATCTCTCCACCTGCGTCTCCACCTGTGGGATGGAGCCAGAGTGAAGACGCTACACCTGTCATTAACTACGACCTGCTGTGTGCTGTGGCCAAACTGGGACCAgGTGAGAAGTACGAGCTGCACGCGGGTACAGAGTCCACTCCAAGTGTGGTGGTCCACGTGTGCGAGAGCGAAAccgaggaagaagaagaagctcGACCCAAAGCCAAGATAGTCCAGACCAGACGCCCCGACGGGCCCCCGAAAATCTACAACTAAACCCATCGCCTCACCGCacatgtttctctctctctctgtgtctctttCTCTCATCCAGGAGAAAGACACGCTTTAtttcaataacaaaaaaacaagctaaataagaCATGGATGGGTTTTGGATGGGTGCCCAGTGCACAGGTGACGCGTGCTGTTCTGAACGGGACTCGTGGACTGAACACACTGTCTCACCGCCGCCTCACGGGACAGATAGGGGGGACCATGAGCCTGCGACCCCCTTCTCACCATCATAGCACTTTCATTCCCTCATTTTAGACTCTTTGTACTGTAGCATTAAAGAGCAGTAATTGTATTTACCAGTCGTAGAAGTAGGTCACATGTAAACTTTGTTACGTTTCTCACTTTTGATTGATcatcaaaggggaaaaaaacgcTTTCAAAGACGGATTTATTTTGCTTTCTCCATTTTATTCTCTCATATCGGTCAGGTCGGCTCATGCGGAGGTGCATTTTTGTCGTTCATAGCCTACACCATGCTAGAATGGGACGACGAGTCAAACGTAAAGAGAGAAGGTGATGAGGGGAAGGTGTTTACGGAGTTAGATGTGTATTATTATTCTTACTGTGTATTTGATACCACACATTTTTGCATGCTAACTGGCGTATTTTATACACTATATTAAAGCATATATCTGACCGCTGTCTTTCTGATGATTGGCCTTGGAAAGCAAAGTAACGGTCAGATGGACAAttctgcatttcttttttttttttgtgtatttgtacGTATAGCGCAACGTTCACTCGCAGGCCTGATAAATGACAAGGGAAAAGCACATGTTTTCATTGATCTTTTTGTTTCTTAGCCTTTTCTGAATACAGATTCTGTATGGTACAGAGATGATGTTTCAGAGTCTACACTGGGATGTGTTCAGATTATTTATTTCCAGAATGCTTGATCATTCACATTAGTGTTTTTTCCATTGCCAGATCCAATTTTGAaaggagagttcatccaaaaatgaaaaaaacgtACTTGGTTAAGTAAGAATCACtttaattttgaggaatgttggtgACCAATCTGTTGTGGCGCCcactgacttcaattgtattggAAAATAACACATTTCTCAATCAAGGATCTGGAAGAACGTCCCttgtttggaatgacatgagagtgagtaaatatttttgggtgaacaatcccatGTCCATGTTTGTTCTAGCTTATAAACCTACACTGTGTTCATTCATACCAAAACGGTTTATATTGAAGGTGTGTTGTAGTAATAATGTACAGTCAGTAAGGCAGAACACTGCTATTGACCAATCAGAGAGGCATGAAATAACCccgcaaacaattttgtgtttaataaacgtctaatagacatctacaCGTacacagcttggctaaaacaaggctatacttgggctgtcagtgaaaatctaatagacatcttagaatagtccaaaactagactagtcgtcaaacagacagattagacagactttatatgtgcagtcattcatttctgtttatttaatgactagtctagttttggcctgttTTTAGACAtcttttcactgacagcccaagtttagtcttgttttagacAAGACGACTaagtttagacgtctattagacatcttttaaaaacaaaagatgcTTGCTGGGAAGAGACATTATAATCAGCCTTATTAAAAGTCACtttcaagaaaaagaaaatgatcaATTGTATTTCAAAAAGTCAAAAGAGCAACTGGTATTCCTATGACTTTCTTAAACGGCATGCGTACATGCGAGACAAAAGATCTTTAAGTCTTTTATTTAAAAGCCAATCCTTCCCTCCTTTAGACAATAAGCTTTTAAACTTTTTCTTGATTTGGTAGCTCTGCATGCTGTGACTTTTGCATAGATGCAGTCTTTCCCTGTTTGTATTCGCCGCTCTGAATGCAGCCCTTTTTCTCCTGCCTGTTTCACCCTGACGGTGTTTCATCTTCACCGGGACGAAAAAAacatgggtgaaaaaaaaatgataaccAGCATGAACACATTTTTTGGACTCTTTGAGTTGAAGGAAGACATGAAGTATATGGAGCAAAATTTGTACTGAGCTGTTACAGATAAGCCTGTCGTCGGCAGCGTaatgtattgatattttttactGTCTTTAAGGCTGTTGTTGCAGTTGCTTCGTATCAGTAAAAAGAAAAATCTCCTTTTTTAATGAAAGATGGTCAGTTTTATCACTGTTGCTGTTCTGTTTGGATATAGGTATCGTCTAGTACTGTAACTGTAGTTCATAACCCGTGAACACAAAgcaataatttacagttatatgTCTGTGTCCTGTATGGAATGggtttatttgttttgattttgtttttgtttttttggctgaGGTGTTTCTCTGACTCTTAGCTTGCTTATGTTGGTGTAAATATGATTGTTATTTGTTTCTCATTGgcatataaatatatgaattaaaagtatatataaagAACTGATTCCTAAAA
>TCONS_00023946
GAGCAGCCTTCATGCGCTCTCGGAGCAGCATCTCAGTCAGAGACAGACAGGGAGTTTGAGTCAATGACAACACACTAACGACTTTGAGCCTCAGAGAGAGACACTTAAAAGCAGAGAGAAAGGGGAATAAAAGaacacatttctttatttatctGTTTACAAGCAGCAAACGAGGGAATGCCATCGATAAACATGAAATTGGAGATGGTGACGCTCATCGCCTGCGATGTAGACACGGAGGTGTTTACATCCGACAAGATGCAGGAGCGGTTTGAGGCTCTGTTTAGGATCTATGATGATCAGACGTCCTTCCAGATGTTCAAGAGCTTCAGAAGAGTTCGGATCAGCTTCAGCACTCCAGAGGCAGCTGCACGCGCTCGCATCGAGCTCCATGAATCGGATTTTAACGGCACTAAACTAAAACTCTACTTTGCACAGGTGCAGAATTCGGGAGACGATGTGGACAAGGCGTACCTGGCTCCACCTCAGCCGGTCAAGCAGTTTCTCATCTCTCCACCTGCGTCTCCACCTGTGGGATGGAGCCAGAGTGAAGACGCTACACCTGTCATTAACTACGACCTGCTGTGTGCTGTGGCCAAACTGGGACCAgGTGAGAAGTACGAGCTGCACGCGGGTACAGAGTCCACTCCAAGTGTGGTGGTCCACGTGTGCGAGAGCGAAAccgaggaagaagaagaagctcGACCCAAAGCCAAGATAGTCCAGACCAGACGCCCCGACGGGCCCCCGAAAATCTACAACTAAACCCATCGCCTCACCGCacatgtttctctctctctctgtgtctctttCTCTCATCCAGGAGAAAGACACGCTTTAtttcaataacaaaaaaacaagctaaataagaCATGGATGGGTTTTGGATGGGTGCCCAGTGCACAGGTGACGCGTGCTGTTCTGAACGGGACTCGTGGACTGAACACACTGTCTCACCGCCGCCTCACGGGACAGATAGGGGGGACCATGAGCCTGCGACCCCCTTCTCACCATCATAGCACTTTCATTCCCTCATTTTAGACTCTTTGTACTGTAGCATTAAAGAGCAGTAATTGTATTTACCAGTCGTAGAAGTAGGTCACATGTAAACTTTGTTACGTTTCTCACTTTTGATTGATcatcaaaggggaaaaaaacgcTTTCAAAGACGGATTTATTTTGCTTTCTCCATTTTATTCTCTCATATCGGTCAGGTCGGCTCATGCGGAGGTGCATTTTTGTCGTTCATAGCCTACACCATGCTAGAATGGGACGACGAGTCAAACGTAAAGAGAGAAGGTGATGAGGGGAAGGTGTTTACGGAGTTAGATGTGTATTATTATTCTTACTGTGTATTTGATACCACACATTTTTGCATGCTAACTGGCGTATTTTATACACTATATTAAAGCATATATCTGACCGCTGTCTTTCTGATGATTGGCCTTGGAAAGCAAAGTAACGGTCAGATGGACAAttctgcatttcttttttttttttgtgtatttgtacGTATAGCGCAACGTTCACTCGCAGGCCTGATAAATGACAAGGGAAAAGCACATGTTTTCATTGATCTTTTTGTTTCTTAGCCTTTTCTGAATACAGATTCTGTATGGTACAGAGATGATGTTTCAGAGTCTACACTGGGATGTGTTCAGATTATTTATTTCCAGAATGCTTGATCATTCACATTAGTGTTTTTTCCATTGCCAGATCCAATTTTGAaaggagagttcatccaaaaatgaaaaaaa

Function

symbol description
rcan3 Predicted to enable calcium-dependent protein serine/threonine phosphatase regulator activity. Predicted to be involved in calcium-mediated signaling. Predicted to be active in cytoplasm and nucleus. Is expressed in central nervous system; otic placode; otic vesicle; paraxial mesoderm; and retina. Orthologous to human RCAN3 (RCAN family member 3).

GO:

id name namespace
GO:0070884 regulation of calcineurin-NFAT signaling cascade biological_process
GO:0019722 calcium-mediated signaling biological_process
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0008597 calcium-dependent protein serine/threonine phosphatase regulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-445 Predicted to enable calcium-dependent protein serine/threonine phosphatase regulator activity. Predicted to be involved in calcium-mediated signaling. Predicted to be active in cytoplasm and nucleus. Is expressed in central nervous system; otic placode; otic vesicle; paraxial mesoderm; and retina. Orthologous to human RCAN3 (RCAN family member 3).

Ensembl:

ensembl_id ENSDARG00000032623

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023945 False 3300 mRNA 0.41 5 26879725 26926577
TCONS_00023946 True 1757 mRNA 0.45 4 26881214 26911852

Neighbor

gene id symbol gene type direction distance location
XLOC_012148 si:dkey-221l4.10 coding downstream 5685 26850124 ~ 26874040 (-)
XLOC_012147 AL928908.2 coding downstream 76989 26783926 ~ 26802736 (-)
XLOC_012146 calm1a coding downstream 158718 26713111 ~ 26721007 (-)
XLOC_012145 mrpl57 coding downstream 268863 26608510 ~ 26610862 (-)
XLOC_012144 fam149b1 coding downstream 274779 26589879 ~ 26604946 (-)
XLOC_012150 nipal3 coding upstream 1841 26928418 ~ 26935339 (-)
XLOC_012151 NA coding upstream 23835 26950412 ~ 26968341 (-)
XLOC_012152 AL928908.3 coding upstream 55458 26982035 ~ 26985759 (-)
XLOC_012153 cnksr1 coding upstream 63954 26990531 ~ 27048640 (-)
XLOC_012154 asap3 coding upstream 260371 27186948 ~ 27235797 (-)
XLOC_012142 NA non-coding downstream 924535 25953510 ~ 25955190 (-)
XLOC_012141 NA non-coding downstream 981941 25893422 ~ 25897784 (-)
XLOC_012140 BX000364.3 non-coding downstream 1015306 25864305 ~ 25864419 (-)
XLOC_012133 si:ch211-214p16.2 non-coding downstream 1291295 25587625 ~ 25588430 (-)
XLOC_012158 NA non-coding upstream 476066 27402643 ~ 27403751 (-)
XLOC_012163 BX465838.4 non-coding upstream 1603890 28530467 ~ 28530582 (-)
XLOC_012165 BX465838.1 non-coding upstream 1697471 28624048 ~ 28624176 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G379600 NA unknown CI01000189 null 475615 ~ 496908 (+)