G390749


Basic Information

Item Value
gene id G390749
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000208
NCBI id null
chromosome length 699623
location 671889 ~ 672382 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU447348
TTGAATAATTACAGAGAAAACTTGGCATCATACACTACATGTTGTTCCATCTAGGAACATGTTGTACTTGGTGAAATCACGCTCACCACTAAATGTTATGTGTGTATTATGTTCTGTGTGTGTTTGTGTGTGTGTCCACTACTATGAGTGTGCACTTGGATGGGTGAAATGCAGAGCACAAATTCTGAGTATGGGGCACCACACTTGGCTACACATCACTTTTGAAAAATTGTGTTCAATTGCACTGTTGTTTAACAACACATCGATTGTTCAGCAGATGAAATGTCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU447348 True 288 lncRNA 0.39 2 671889 672382

Neighbor

gene id symbol gene type direction distance location
CI01000208_00659672_00669637 CYP2K21, CYP2K19, CYP2K18 coding upstream 2234 659598 ~ 669655 (+)
CI01000208_00655853_00657320 NA coding upstream 14360 654013 ~ 657529 (+)
CI01000208_00622771_00646633 ABCA3B, ABCA3 coding upstream 24723 622771 ~ 647166 (+)
CI01000208_00611303_00616477 NA coding upstream 55089 611303 ~ 616800 (+)
CI01000208_00571370_00591616 CCNF coding upstream 79405 571370 ~ 592484 (+)
CI01000208_00674776_00677559 NA coding downstream 2340 674722 ~ 678098 (+)
CI01000208_00679245_00685898 CYP2K16, CYP2K19 coding downstream 6863 679245 ~ 685908 (+)
CI01000208_00688872_00693800 CYP2K8 coding downstream 16490 688872 ~ 693800 (+)
G390737 NA non-coding upstream 119022 552660 ~ 552867 (+)
G390729 NA non-coding upstream 122580 548726 ~ 549309 (+)
G390631 NA non-coding upstream 168748 475836 ~ 503141 (+)
CI01000208_00479959_00498664 NA non-coding upstream 186187 479145 ~ 499471 (+)
G390621 NA non-coding upstream 212471 458666 ~ 459418 (+)
CI01000208_00554756_00555762 NA other upstream 113194 554569 ~ 558695 (+)

Expression


Co-expression Network