XLOC_012160 (ptafr)


Basic Information

Item Value
gene id XLOC_012160
gene name ptafr
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 27971144 ~ 27976031 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023966
agagagagctgaaggCGTGAAAGAAAGAGGTGTAACTGCGTTTCAGATACGACGAAGAGTTGAAAGTTTCTAAAAGAGCAGCGCGAGCAGCACCTTCACTCACTGGCATTTATAAGTCTGCTTTCTTTGCAGATAGCCAGGATGGAAAACATGTCGTCTACTAAATGGACCGAAAATACCAACGACACTGAAATCATCGATTCAAGGTTCCGTTACACTCTCTTTCCCATTTTCTATGGTGTGGTCTTCGTCTTGGGGTTGATAGCCAACTGCTATGCTCTCTATGTGCTTCACCGCATGCGGGAGTCTAAAGCCATGAATGAGATTCGGATCTACATGACCAACTTGACTGTCGCAGACCTGTTGTTTGTGTCTGCTCTACCGTTCTGGATTGACTACTACATGCATGAAGGTCACTGGAGATCCACAGAAGCCTTCTGTCGTATCACAGgcacatttttctttattaacaCCTATGGCTCTATTCTATTCCTCACTGTCATCAGCATTAACCGTTACTGGGCTGTTACCAAACCCCTAAAGGCAGCCTCTTCTGACTGCTGGAAACGTGGAGCGATCATCTCAGTGCTCATCTGGGCTTTCATCCTTTCAGCATCGATTCCTCAACTTACTAAAGAGGGAATTCAGAAGGAACAAAGAATGAACAGGTCCATGCAACGCTGTTTTGAGGGTTACCACTACACAGATGAAAATACAAAAAACGTATTGGTCATCACTCACTTCAGCATTATTGGCTTGTTCTTCCTTGTTTTCTTAATGGTGATTATCTGCAACATCTCCATCGCTCGAGCTCTTCTGTCTCAACCCATCAGTCAGCCTCGAGCCAGCACAGGACGACGTCCTGGCGGGACCAAACGAAGAGCTTTGAGGATGTTGTGTGCCGTCATTGGCGTGTTTGTAATCTGTTTCCTACCCCATCATGTGGTGCAAGGTCCCTGGGTTTTGTCAGTGCTGCAACTGAAGAAGTATTGGTCCACATGGACTCACCAAACCTTAAACGATGCCCATCAGATCACCCTCATGCTTATGGGGATCAACTGTCTCCTAGACCCATTGGTGTATTGCTTCGCTACCACAAAATTTCGCAAGTACCTCGAAAATCATTTCACAAAGATGAAGAATAGGAAAAACTGCTCACGTTACACGTTAAGCACAGGTATATCACTGAAGAGTAGACATCAGAGCATTGTCAATGCTGTAGATGAAGAGAAAGCATAGCTGGGAaataccaaagactatagaatacacaagacatgtcactcgtatctttttgaatggggaaaa
>TCONS_00023967
ATGGAAAACATGTCGTCTACTAAATGGACCGAAAATACCAACGACACTGAAATCATCGATTCAAGGTTCCGTTACACTCTCTTTCCCATTTTCTATGGTGTGGTCTTCGTCTTGGGGTTGATAGCCAACTGCTATGCTCTCTATGTGCTTCACCGCATGCGGGAGTCTAAAGCCATGAATGAGATTCGGATCTACATGACCAACTTGACTGTCGCAGACCTGTTGTTTGTGTCTGCTCTACCGTTCTGGATTGACTACTACATGCATGAAGGTCACTGGAGATCCACAGAAGCCTTCTGTCGTATCACAGgcacatttttctttattaacaCCTATGGCTCTATTCTATTCCTCACTGTCATCAGCATTAACCGTTACTGGGCTGTTACCAAACCCCTAAAGGCAGCCTCTTCTGACTGCTGGAAACGTGGAGCGATCATCTCAGTGCTCATCTGGGCTTTCATCCTTTCAGCATCGATTCCTCAACTTACTAAAGAGGGAATTCAGAAGGAACAAAGAATGAACAGGTCCATGCAACGCTGTTTTGAGGGTTACCACTACACAGATGAAAATACAAAAAACGTATTGGTCATCACTCACTTCAGCATTATTGGCTTGTTCTTCCTTGTTTTCTTAATGGTGATTATCTGCAACATCTCCATCGCTCGAGCTCTTCTGTCTCAACCCATCAGTCAGCCTCGAGCCAGCACAGGACGACGTCCTGGCGGGACCAAACGAAGAGCTTTGAGGATGTTGTGTGCCGTCATTGGCGTGTTTGTAATCTGTTTCCTACCCCATCATGTGGTGCAAGGTCCCTGGGTTTTGTCAGTGCTGCAACTGAAGAAGTATTGGTCCACATGGACTCACCAAACCTTAAACGATGCCCATCAGATCACCCTCATGCTTATGGGGATCAACTGTCTCCTAGACCCATTGGTGTATTGCTTCGCTACCACAAAATTTCGCAAGTACCTCGAAAATCATTTCACAAAGATGAAGAATAGGAAAAACTGCTCACGTTACACGTTAAGCACAGGTATATCACTGAAGAGTAGACATCAGAGCATTGTCAATGCTGTAGATGAAGAGAAAGCATAG

Function

symbol description
ptafr Predicted to enable G protein-coupled purinergic nucleotide receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within chemotaxis and signal transduction. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Orthologous to human PTAFR (platelet activating factor receptor).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0006935 chemotaxis biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004992 platelet activating factor receptor activity molecular_function
GO:0045028 G protein-coupled purinergic nucleotide receptor activity molecular_function

KEGG:

id description
ko04020 Calcium signaling pathway
ko04080 Neuroactive ligand-receptor interaction
ko05150 Staphylococcus aureus infection
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-131127-236 Predicted to enable G protein-coupled purinergic nucleotide receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within chemotaxis and signal transduction. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Orthologous to human PTAFR (platelet activating factor receptor).

Ensembl:

ensembl_id ENSDARG00000042370

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023966 False 1305 mRNA 0.45 2 27971144 27976031
TCONS_00023967 True 1098 mRNA 0.45 1 27971210 27972307

Neighbor

gene id symbol gene type direction distance location
XLOC_012159 ythdf2 coding downstream 551645 27407918 ~ 27419499 (-)
XLOC_012158 NA coding downstream 567393 27402643 ~ 27403751 (-)
XLOC_012157 si:ch1073-358c10.1 coding downstream 588276 27314088 ~ 27382868 (-)
XLOC_012156 id3 coding downstream 697848 27271399 ~ 27273296 (-)
XLOC_012155 si:ch211-160f23.5 coding downstream 705091 27243447 ~ 27266053 (-)
XLOC_012161 kdm1a coding upstream 106410 28082441 ~ 28101989 (-)
XLOC_012162 htr1d coding upstream 190828 28166859 ~ 28198099 (-)
XLOC_012163 BX465838.4 coding upstream 554436 28530467 ~ 28530582 (-)
XLOC_012164 im:7136021 coding upstream 631386 28607417 ~ 28612851 (-)
XLOC_012165 BX465838.1 coding upstream 648017 28624048 ~ 28624176 (-)
XLOC_012152 AL928908.3 non-coding downstream 985385 26982035 ~ 26985759 (-)
XLOC_012151 NA non-coding downstream 1002803 26950412 ~ 26968341 (-)
XLOC_012147 AL928908.2 non-coding downstream 1168408 26783926 ~ 26802736 (-)
XLOC_012142 NA non-coding downstream 2015954 25953510 ~ 25955190 (-)
XLOC_012166 BX465838.2 non-coding upstream 667427 28643458 ~ 28652512 (-)
XLOC_012172 NA non-coding upstream 945541 28921572 ~ 29022679 (-)
XLOC_012176 NA non-coding upstream 1240035 29216066 ~ 29224911 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000189_01256704_01259709 NA coding CI01000189 null 1256656 ~ 1259895 (-)