Fish Transcriptome and Expression Database

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model fish

XLOC_012165 (BX465838.1)

Basic Information

Item	Value
gene id	XLOC_012165
gene name	BX465838.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007128.7
NCBI id	CM002901.2
chromosome length	53461100
location	28624048 ~ 28624176 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023979
ACCAACGTTTGATAAGATTCACCTATTAGGAGAGGTCAGGACTTGGGCTGGGTTACTCACTGAAGCAGgcttgagcctggtcagtacctggatgggagaccacatgagaaaactaggttgctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000084529

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00023979	True	129	rRNA	0.49	1	28624048	28624176

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_012164	im:7136021	coding	downstream	11197	28607417 ~ 28612851 (-)
XLOC_012163	BX465838.4	coding	downstream	93466	28530467 ~ 28530582 (-)
XLOC_012162	htr1d	coding	downstream	425949	28166859 ~ 28198099 (-)
XLOC_012161	kdm1a	coding	downstream	522059	28082441 ~ 28101989 (-)
XLOC_012160	ptafr	coding	downstream	648017	27971144 ~ 27976031 (-)
XLOC_012166	BX465838.2	coding	upstream	19282	28643458 ~ 28652512 (-)
XLOC_012167	ap4s1	coding	upstream	79795	28703971 ~ 28707970 (-)
XLOC_012168	coch	coding	upstream	119485	28743661 ~ 28749640 (-)
XLOC_012169	opn6b	coding	upstream	136410	28760586 ~ 28770800 (-)
XLOC_012170	scfd1	coding	upstream	146852	28771028 ~ 28797395 (-)
XLOC_012158	NA	non-coding	downstream	1220297	27402643 ~ 27403751 (-)
XLOC_012152	AL928908.3	non-coding	downstream	1638289	26982035 ~ 26985759 (-)
XLOC_012151	NA	non-coding	downstream	1655707	26950412 ~ 26968341 (-)
XLOC_012147	AL928908.2	non-coding	downstream	1821312	26783926 ~ 26802736 (-)
XLOC_012172	NA	non-coding	upstream	297396	28921572 ~ 29022679 (-)
XLOC_012176	NA	non-coding	upstream	591890	29216066 ~ 29224911 (-)
XLOC_012179	AL845481.1	non-coding	upstream	648787	29272963 ~ 29273081 (-)
XLOC_012182	AL928842.1	non-coding	upstream	1013029	29637205 ~ 29637321 (-)

Expression

Co-expression Network