XLOC_012191 (si:ch211-175f11.5)


Basic Information

Item Value
gene id XLOC_012191
gene name si:ch211-175f11.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 30469744 ~ 30473374 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024013
GTTAGGGCAACACAAGTAAACCACCTGACGACTGTGAAAGAGTGAGACGCTGGGAGACACAACATTGGAGCAGTTTTGAGCGTATTTGTGGTATAGAAACTAATCATGAATCCATTACCGAAGTTATTAGAAGACTGCCTCATTTCCACGAAACATGTAGAGCGTGCGGCGGTATTCGTGGCTAAAACTTGCGACATAACGGCCGCGTCCAACTTTACAGTATGTCTTGAAGAAATACAAATATTTCTCGACGCTTTCAAACATCTAAATGAAACGATGAAGAAAGGACTGATCTTCAGGGACAAACCCTACACCTGTGTGCGTGCTGACAAACACTCCATATACGCCAAAAACgAAGGACGTGGCCTGATACTGGTGAGAACTGCACTGTATGTGATTGTTGCCACATACTCACAAACCATGCATCCAAGTATCTGTGTGGAAGCAGTTGAAAAACTAGGTGATTATCTGCGTGAAAAGGGAAAATGAAGCACATCGTATCAAAGGAGAAGAGGATCTTCAGTGTGATTGTTTTACGATTGATGAGAAACTGTGAAATGTCTCTGCTTAGATATACTGGAACAAAAAGGTAGGTTGTTTCAGTACCGCTCAGACAAACAAGAAAGCAAGTTTTAGATTCATGTAATGGGATTTTAATTTACATACTGAGATTTGGCATCTTAAAATATACACGCAACAGTAGTTTTTACATCTCAATGCTTAACAGAATGACACATCAACTCAACTGCCACAACTTAGGCAACAAGATCTTTCACAGAAAGAATATAAAACTCCATGGAGACTGCAAACAGAACAAAGCTAATGTAACTTTAAGTTATGGACGTTATGAACAAGACATGTTACATGGATTTAGTACCACAGTCTTTATATTATTCCACTTTTTTGTTCAGAATAAGAAATCTTTGTTAAGTACAGAGAGAGCAGAAACATTCTATCATGTTTTGACCTGATCATTCACAGTTTGTAAGTTTGTAGCAGTCATCTGTCACATACAATAAGTCTTTATCGCCAAACTGAACCAATTAGAGATTAGTAAAAATTGCATTTTCATGTTGCACACATCTGTGTCATACACTATTTTTAATTTGCAAAACAATAACACATGAATTGCCATAAAATATACACAGTTCTTTCAAA
>TCONS_00024014
AAGTAAACCACCTGACGACTGTGAAAGAGTGAGACGCTGGGAGACACAACATTGGAGCAGTTTTGAGCGTATTTGTGGTATAGAAACTAATCATGAATCCATTACCGAAGTTATTAGAAGACTGCCTCATTTCCACGAAACATGTAGAGCGTGCGGCGGTATTCGTGGCTAAAACTTGCGACATAACGGCCGCGTCCAACTTTACAGTATGTCTTGAAGAAATACAAATATTTCTCGACGCTTTCAAACATCTAAATGAAACGATGAAGAAAGGACTGATCTTCAGGGACAAACCCTACACCTGTGTGCGTGCTGACAAACACTCCATATACGCCAAAAACGTAAGTAAAACACTTGTCAAAGTCATCTAGATGTCGACAAAGAATCTGCTTGAattatctaatcagccaattacggAGGAAGCTCAATGCATTAAAGGAAAAGGGATCATTCACCCGCAAATgtcagttctgtcatcatttactcacccaatacttgtttcaaacatttataagtttctaatgttgaacacaaaagaagatattttgttgaatgctgaaaacctgtaactgatTAACTTCTATAGTAGCTGTTTaattactgtggaagtcaattgttacaggttttaaGTTTTCATCTCATAAAGAAACTCACCGTAAAgtggaatcacttgagggtgagtaaataaatgtgtacattttcatttttaggtgaactactgTATGTCTCTTTAAGGCTGAGCAACTGCATGGAATAGTTGATGGTGTCAAATGGGTAGAGGAGAttgtctgaatatttcagaaactacaACTGGCTGACAGTTGAGTTCTG

Function

GO:

id name namespace
GO:0042989 sequestering of actin monomers biological_process
GO:0005938 cell cortex cellular_component
GO:0003779 actin binding molecular_function
GO:0003785 actin monomer binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-583 Predicted to enable actin monomer binding activity. Predicted to be involved in sequestering of actin monomers. Predicted to be active in cell cortex. Orthologous to human PFN4 (profilin family member 4).

Ensembl:

ensembl_id ENSDARG00000097487

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024013 False 1158 mRNA 0.38 4 30469744 30473374
TCONS_00024014 True 831 lncRNA 0.38 2 30472411 30473361

Neighbor

gene id symbol gene type direction distance location
XLOC_012190 NA coding downstream 59985 30398949 ~ 30409759 (-)
XLOC_012189 NA coding downstream 100219 30306215 ~ 30369525 (-)
XLOC_012188 NA coding downstream 189031 30278131 ~ 30280713 (-)
XLOC_012187 si:dkey-27l15.1 coding downstream 244220 30140099 ~ 30225524 (-)
XLOC_012186 NA coding downstream 387031 30077331 ~ 30082713 (-)
XLOC_012192 itsn2b coding upstream 133 30473507 ~ 30521043 (-)
XLOC_012193 NA coding upstream 100198 30573572 ~ 30593058 (-)
XLOC_012194 sh3yl1 coding upstream 131445 30604819 ~ 30652738 (-)
XLOC_012195 alkal2b coding upstream 187974 30661348 ~ 30666037 (-)
XLOC_012196 zgc:194392 coding upstream 227253 30700627 ~ 30702411 (-)
XLOC_012185 CR377229.1 non-coding downstream 415587 29976009 ~ 30054157 (-)
XLOC_012201 BX571712.1 non-coding upstream 622952 31096326 ~ 31097541 (-)
XLOC_012203 BX571712.2 non-coding upstream 708576 31181950 ~ 31185243 (-)
XLOC_012208 BX539317.1 non-coding upstream 911060 31384434 ~ 31384548 (-)
XLOC_012218 NA non-coding upstream 1654523 32127897 ~ 32136128 (-)

Expression


Co-expression Network