XLOC_012193


Basic Information

Item Value
gene id XLOC_012193
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 30573572 ~ 30593058 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024931
TGCGCCTCTTGATCATCAGCTCACTCCAGTTGAAGGGGCGACGGAACTGCGAGCGAAATGTTTGGCTCTCCGGGTGGTCAATAGAAACGGTTGGAAGATGAGTGGCTTTCCTACCAGCCTCTGCTGTCGGTTCCCTAAATCGAAGGACTTGGTTAAATGCTGCTTTTAGTCCTGCAACAGTTTTCATaaACCCTTTGCATCTCATATGGCCTTTACCCCAGGGACTTAACCCTTTCTCTACTACCGTTCTGCTGGTGCTCGGTACTATGGGAGAAAGAAAAAGCAGGTGCACATATCAATAGTTCCGCTGGATGGAGCTGGTCTGACGTGGCAAGCTGGGGCAGGAGCCAGTTGGAGTGACAGGTGGGGAAGGAAGGAGGTTACGGCAGCGTTCATCTTCAGAATCGCCACGGCCCAGGACCTTCCTTTTTGACCTGGGGATTAAAAGACAGCAGGACATTTTGTTAGATGTACACTTTCACAAAGGCTGGTTGCAGAGAATGCTGGGCTTTGGGAGTAATACTGAGAACTGCGAAAGCCATCTTTTCTGAGCTTGTCACACTCTGGAAAGGTTGACTTTGGCCTGACGGTGAAGATCCTCAACACATGCTGGTCTGGACCCAGGCAGGAAGACGTTCTCTTGGTGGTGCCAGGGGGCTGTGTAGTGCACCGACCATTTGCTCTCCTCATCAAGACTGGACACCGCTATAAGGAAAATAAACCAGAACACATTAAAATTTAACATGTTTAAGAAATAAGGTTAGtggtttgtgtaaaaatgtattgcaaCTAAAAAAAAGAATGCATGAAGAGATTTATAGTGGCTTTTTCCTTAATTACTGCCAAGTAATTACTACCAGTTAATTACTACCAGTTTTGACCAGAGTGAACCTCTAAGATGGTATGATTTATTTCCAAAACAGCATCTTTAACCAACTATCAGTGCAATTTTTATCATTTTGAGCATTTCAGTTTAATGATTCAGTGTTGATGATCAATATGATCTATGAATCCTACAATTATTCGCAAACAGCATAACACATACTTTTGTGGTTGGAATATAGCTCTCAACCTGAGATTAGaaacattgttgtttttaaaaaaattttttagagTATTGGTG
>TCONS_00024932
tttatttagtaaaaaataaaaaataaaacatttccatCAGAAGATATCCAGGGACTCATTACCGACAACAAAGTGGTATCTCTAAAACAACTCTGTTCTCTAATGTCCTAACAATATTcggaaaaaaatgaaaacaagaaaAAGATTACTTAGAAACTAAGTAGCCTACCTATATTAATCTTATAGGCTACATTAAAAAACTCTTCTCATTGAAATGTAGAGAACTCAGACTCCTTTCTTCAGCAATCGTTACTGACAATAACTGACACGCAATTCCCGCCAACTGTATTGCAAAAAGCCCGCGTGAGTTGCGCCTCTTGATCATCAGCTCACTCCAGTTGAAGGGGCGACGGAACTGCGAGCGAAATGTTTGGCTCTCCGGGTGGTCAATAGAAACGGTTGGAAGATGAGTGGCTTTCCTACCAGCCTCTGCTGTCGGTTCCCTAAATCGAAGGACTTGGTTAAATGCTGCTTTTAGTCCTGCAACAGTTTTCATaaACCCTTTGCATCTCATATGGCCTTTACCCCAGGGACTTAACCCTTTCTCTACTACCGTTCTGCTGGTGCTCGGTACTATGGGAGAAAGAAAAAGCAGGTGCACATATCAATAGTAAGTATGATAAACAGTACCCCTGTTTAGAAATAAGaaacataaaaatgtacaaattgtcAAATTCGGGCAAAAATGAGAGACAAAGGTGAGGAATTttccaacatttaaaaacaaagaggCCTAAATAGAAAGTTTCTATGAATGAAACACAATGGTTAGTTTTATAATGCCTTGATTATTTACATTGGTAAAGtatatataactattattattattgtccaaCTGTAAACAGATACAGTAAAACTCTATTTGGCTTGCATTAACTGAAAAACATTCTGTTCAGATAAACTTGCATCTCTCTCATTGCTCTAACTGTAGGTTGGACACAAAGGAAAAGAGATAAAGAATGTAAAGGTgcttaaaatatacatattttaaatcagTCTCTAAAATAACCTGTTCCAAGAGGGCCACTGTCCATTACAATTTAGCTCCTACCCCAATACACATCTTAATTGTGAATAAACTTAGTAGAAACTTCTATACTTAGTCCCTCCTCCTCTGTGTGCACACTTGCATGACGTAAAAATATGATTATGGGTATGAGACAAGTGTGTTAAAACTGATAAATGCTATGCTCTGGACACTGGgcctccaggaacaggactgGACACTCCTTCTCTAAACACTCAATCTTCATATCACCTCCACACTCATTCTACAGCATTCTCCCCATAACTATCCAGTCACATGCCCCCCCTTCAAACTCATGCACCAACTTTTCAACGAATGTGATCTGGATCTTCATTCACGATTTAAGTGCTCTCTTTTGATTGTACTTTCCATCATCATGGAGCATTCAAAACAAAATCCCTCAATAACGTTCTGCTTACGTTCATTCTTTCCTCAACTTACCAGCCAAGATAAATGTACATTTCCATGTTCTCCTAAACTGCATACAGAAAGCTAGGAACATTTGATTAAACAAAACCAGTAACCCTCTGTTAATATCACTTTCTTTAGAGAATACTAATGTCTTCTGAAAGATAAAACTCTCACTGATGGAACAGAGCAAAACTAGAGTTACAGAATTACAGAAAGTTCCCCCATTGCCTCTTCTTCTTTATTCCTTGGGGAATTTTGTCAGCCAGCACAATCATGGCCTTCCAGCTAGAGTTCAGACCTTTATATCGAATGGACAACTAGCTGTTAGAGTTGTGTCAAGAGCTCTAAGTGCTGCCTTGAGCGCAGACCATGCTGCTGGAGGATAAAGCCAAGACAAAATGATTCTCGCTACTTAAGTAGCAGTCTGTAGATTCAGCCACCTCTCCATCTCGTTCACAGATGGCAGTCATTGGCCTACTGGTAATCCGGCTGCGGCTGTTATACCGGCTGCTGGCTGCGGAAGGTGGTGTGCGCGAGCGCCCATATTTTGGGATAGTTTGTCCAGTGGTAAAGCGAGGCAAAGCTCCCTCCGTCCGTGCCCACTCTTCATGTGCTCTCCTGCTGCTTGTCGGAGAGGACAGTCCGTCAGCTAGTGCATTTTCTGAATTAGCCCTTTGGAAACGGGGGTCTGTGCATTTGAGAATCTCAGCGGCTGACATGCGAAAGCTGGACTCTGAGCGGCTGCCCTTCTTGAGTAGCAAAGCTTTAAAACTGTCATTGCTTGTGGTGGAGCGACGTAGGTTCCGCTGGATGGAGCTGGTCTGACGTGGCAAGCTGGGGCAGGAGCCAGTTGGAGTGACAGGTGGGGAAGGAAGGAGGTTACGGCAGCGTTCATCTTCAGAATCGCCACGGCCCAGGACCTTCCTTTTTGACCTGGGGATTAAAAGACAGCAGGACATTTTGTTAGATGTACACTTTCACAAAGGCTGGTTGCAGAGAATGCTGGGCTTTGGGAGTAATACTGAGAACTGCGAAAGCCATCTTTTCTGAGCTTGTCACACTCTGGAAAGAGCTCAGTGTAATCACCTAATCCTTACAGcagcagctcatgaaaagacaaGACACCTTCGCAGGTTGACTTTGGCCTGACGGTGAAGATCCTCAACACATGCTGGTCTGGACCCAGGCAGGAAGACGTTCTCTTGGTGGTGCCAGGGGGCTGTGTAGTGCACCGACCATTTGCTCTCCTCATCAAGACTGGACACCGCTATAAGGAAAATAAACCAGAACACATTAAAATTTAACATGTTTAAGAAATAAGGTTAGtggtttgtgtaaaaatgtattgcaaCTAAAAAAAAGAATGCATGAAGAGATTTATAGTGGCTTTTTCCTTAATTACTGCCAAGTAATTACTACCAGTTAATTACTACCAGTTTTGACCAGAGTGAACCTCTAAGATGGTATGATTTATTTCCAAAACAGCATCTTTAACCAACTATCAGTGCAATTTTTATCATTTTGAGCATTTCAGTTTAATGATTCAGTGTTGATGATCAATATGATCTATGAATCCTACAATTATTCGCAAACAGCATAACACATACTTTTGTGGTTGGAATATAGCTCTCAACCTGAGATTAGaaacattgttgtttttaaaaaaattttttagagTATTGGTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024931 False 1123 lncRNA 0.43 5 30573572 30592749
TCONS_00024932 True 3123 lncRNA 0.41 5 30573572 30593058

Neighbor

gene id symbol gene type direction distance location
XLOC_012192 itsn2b coding downstream 52529 30473507 ~ 30521043 (-)
XLOC_012191 si:ch211-175f11.5 coding downstream 100198 30469744 ~ 30473374 (-)
XLOC_012190 NA coding downstream 163813 30398949 ~ 30409759 (-)
XLOC_012189 NA coding downstream 204047 30306215 ~ 30369525 (-)
XLOC_012188 NA coding downstream 292859 30278131 ~ 30280713 (-)
XLOC_012194 sh3yl1 coding upstream 11761 30604819 ~ 30652738 (-)
XLOC_012195 alkal2b coding upstream 68290 30661348 ~ 30666037 (-)
XLOC_012196 zgc:194392 coding upstream 107569 30700627 ~ 30702411 (-)
XLOC_012197 gdf7 coding upstream 242018 30835076 ~ 30839338 (-)
XLOC_012198 yy1a coding upstream 263950 30857008 ~ 30863252 (-)
XLOC_012186 NA non-coding downstream 490859 30077331 ~ 30082713 (-)
XLOC_012185 CR377229.1 non-coding downstream 519415 29976009 ~ 30054157 (-)
XLOC_012201 BX571712.1 non-coding upstream 503268 31096326 ~ 31097541 (-)
XLOC_012203 BX571712.2 non-coding upstream 588892 31181950 ~ 31185243 (-)
XLOC_012208 BX539317.1 non-coding upstream 791376 31384434 ~ 31384548 (-)
XLOC_012218 NA non-coding upstream 1534839 32127897 ~ 32136128 (-)
XLOC_012219 CR407546.1 non-coding upstream 1653071 32246129 ~ 32246255 (-)

Expression


Co-expression Network