XLOC_012211 (si:dkey-170l10.1)


Basic Information

Item Value
gene id XLOC_012211
gene name si:dkey-170l10.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 31606635 ~ 31611692 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024062
GCGGATCTAAAGCAGGAAGTAGGAAGTTGCATTTCGCTTAGGCGGTAGATTGAAAACAACGCAGCAGACCACTTCTTTGGCAAAATAAAGCAGGTCGGGAGAAATCGCATTGAGGAACTACAGGTCTGGAAAAAACCCTTGTTATGAATTCCTGGGACCCCATTACTTACACAGTGACACCTGCTGCTAAGATTTTAGCCAGATGTGTAGCAGCAGGCACCATGACACAGCAGGAGCTTGATGCTGTGCCACAGGATTCAGAAATCTTCTCCTCATCTTTACTTGAAGCTGAGCAGCTGAACAGAATCAGACAAGATCTTGATCAGGCTAATTTAGATTTAGAGCTGTTGAATCTGGAAAGAGACTGTGCAGACGTGGCTCACAATCATTATCTCAGTCAAAGGTTTGCTTCCTTGCAACAGTTCACTTCTCACCTTCAGGAGGTGCTGCGAGAACAGACAGTCCTGCGAGAGAGACTCACAAAGCCTCTGTGTCAGCAGAACCTGCCCATTCAGGCTGATCTGCACAGGTATGTGGTAGAGCTCATGCGGATGGTGGTGGAGTTCGTTCAGAACTTAGATGTGAAAATTGAGATGGTTCGAGCAATTCCGACTACTGACCATCATTTAACTAATCTGAGCAAAGCCAGAACTCAACTGCTGGCTCATGTCACTGAGGTCGAGAACCTGTACAAGCAAGTCCTTAAGCGAAGAGGACAACCACAGACCAATATTAAGGACATGTCTAGctgaataatatatttaaaaataaaatgaacacatcGGTTATTAGGTATAGTATCCATTTACTGAATCTTGTTTGTGTATACATCTAACATGCTTTCATAGTTTCTAAAAGAACTGGTTGGGTTTATATTTCATATACTTCagcaatatgtaaatatacatgttTACTATTTTCTTTTGTGTATCTATATTAAATAAGTGCAATTAAATGGTCCATATTTTAAGCCAAAA
>TCONS_00024063
GCAAAATAAAGCAGGTCGGGAGAAATCGCATTGAGGAACTACAGGTCTGGAAAAAACCCTTGTTATGAATTCCTGGGACCCCATTACTTACACAGTGACACCTGCTGCTAAGATTTTAGCCAGATGTGTAGCAGCAGGCACCATGACACAGGAGCTTGATGCTGTGCCACAGGATTCAGAAATCTTCTCCTCATCTTTACTTGAAGCTGAGCAGCTGAACAGAATCAGACAAGATCTTGATCAGGTTAAAAGTCATTTCAGCACTTAATGGAATAGTCTATCCACATTTGAAAATGATGTCATCAACATCCTGCACTTGTTTCAAAcccgtttgagtttctttcttctgctgaacacaaaagaagatattttgaagaatgttggaaactagtaGCCGTTTACatccatagtaatttttttcctactatggatgtcaaaatGTTTCcaggatttttcaaaataacatattttatgttcacCTGATTAgagtttttttaaaagatttttattttttttttttaattctgaaaatttatttttgatttgcaAACCCTCAAAGATcaattcagttcattcaattcaagCTTATTACAACAAGAAGGTTATTGTATTATATGTTATTACATTAGTCAAAAATCCTAATGTTAGGGTGTTGTGTATAGGATGGACCATATGTAGTGTCCTTTTCCAAAAGATGATATCTATGTgtatcatatatattatatatagtttattttatatataat

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000036781

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024062 False 977 mRNA 0.41 7 31606635 31611692
TCONS_00024063 True 746 lncRNA 0.33 3 31608540 31611613

Neighbor

gene id symbol gene type direction distance location
XLOC_012210 rpap1 coding downstream 26902 31535764 ~ 31579733 (-)
XLOC_012209 ltk coding downstream 123166 31400584 ~ 31483469 (-)
XLOC_012208 BX539317.1 coding downstream 222087 31384434 ~ 31384548 (-)
XLOC_012207 ivd coding downstream 245679 31346560 ~ 31360956 (-)
XLOC_012206 bahd1 coding downstream 262235 31276437 ~ 31344400 (-)
XLOC_012212 znf839 coding upstream 11664 31623356 ~ 31639845 (-)
XLOC_012213 vsx2 coding upstream 40948 31652640 ~ 31659670 (-)
XLOC_012214 lin52 coding upstream 55933 31667625 ~ 31695257 (-)
XLOC_012215 pomt2 coding upstream 84965 31696657 ~ 31712041 (-)
XLOC_012216 dtd2 coding upstream 105500 31717192 ~ 31719071 (-)
XLOC_012203 BX571712.2 non-coding downstream 421392 31181950 ~ 31185243 (-)
XLOC_012201 BX571712.1 non-coding downstream 509094 31096326 ~ 31097541 (-)
XLOC_012193 NA non-coding downstream 1013577 30573572 ~ 30593058 (-)
XLOC_012190 NA non-coding downstream 1196876 30398949 ~ 30409759 (-)
XLOC_012218 NA non-coding upstream 516205 32127897 ~ 32136128 (-)
XLOC_012219 CR407546.1 non-coding upstream 634437 32246129 ~ 32246255 (-)
XLOC_012228 NA non-coding upstream 1522127 33133819 ~ 33138376 (-)
XLOC_012229 NA non-coding upstream 1533902 33145594 ~ 33162478 (-)
XLOC_012230 AL590149.1 non-coding upstream 1595088 33206780 ~ 33231714 (-)

Expression


Co-expression Network