XLOC_012215 (pomt2)


Basic Information

Item Value
gene id XLOC_012215
gene name pomt2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 31696657 ~ 31712041 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024068
AACCAACAATCTACAACAGTTTATGGTTAAGGACAACAACATGAGCTGGAAAACGTCAGGAGCTTTGCAATAAAATCTAACAGAATATCTCATTCGGCACGATGTTGAACACCACCAGCCCAAAAGCTCTTCAATCCTAATGGACGTCAGACCGAAGGAGAATTTCTCTCAAAGACAAGACACATCCGCTGTAAGACATCGAAAAACATGTAAGGTAAACGAGAGGGCTGAGATTCCTTCCCAGCCTCACAATGGGACTATTAATGGTGTAAATAAGAGGATCACCAAACGAGAAGGAGGAGAACACATCAGTTCACCCAGCAGAGATGCTCATGTGCCCGTTTTTATTTTGGCTCTGGTGATAGTGTTGTCTGTATCTACACGCTTTTACAAGATCACTGAGCCTCCTCATGTATGTTGGGATGAGACTCATTTTGGGAAAATGGGAAGCTATTACATTAATCGCACCTTCTTCTTTGATGTCCATCCGCCCCTTGGAAAGATGCTGATCGGCCTCGCTGGATACTTGACAGGTTACGATGGGACCTTTCCCTTCATAAAGCCAGGGGACAAATATGAGCACCACAATTACTGGGGGATGAGAGCGTTCTGTGCTGCTCTTGGTTCCTGTTTGCCTCCTTTTGCCTTTCTTGTTGTCCTGGAGCTCTCTCAGTCTTCAACAGCAGCGCTCATCGCAGCCTCTCTGCTCATCTTCGACACTGGTTGCATCACCCTGTCTCAGTATATCCTGCTGGATCCCATTCTGATGTTTTTCATCATGGGCTCGGTTCTGTGCATGGTCAAATTCAACACGCAAAGACTCGGGCCTTTCAGCTTCTCCTGGTGGTTCTGGCTGCTTCTGACAGGGCTATGCCTCTCTGGGTCTCTTGGTGTAAAGTTTGTGGGGCTGTTTGTCATTCTCTTGGTTGGAATCAACACAGCGCTTGATCTTTGGAGACTGCTTGGGGACCTCAGCTTATCTCTGGTGGATTTTGGGAAGCACTTACTAGCTCGAGTTTTTGGGTTGATAATGCTTCCGTTGTTCTTGTACACGACAATATTCGCCATTCATTTCATTGTCTTAAACAGGAGTGGTCCCGGAGATGGTTTCTTCAGCTCTGCGTTTCAGTCTCGCTTGATTGGAAACAATCTACACAACGCCTCCATGCCAGAGTATCTGGCATATGGCTCAGTCATAACAGTTAAAAATCTGCGAATTGCAGGAGGATATTTGCACTCTCACTGGCACCTTTACCCGGAGGGGGTTGGAGCTCACCAGCAGCAGGTTACTGCCTATTTACACAAAGATTATAACAACCTGTGGTTGGTCAAGAGACTTGACAACTCTGACGATCTCACAGGCTCACCAGAGCTCGTCCGTCATGGTGACATCATTAGACTGGAGCATAAAGAAACTACAAGAAATCTTCATAGTCATTTCCATGAAGCGCCCCTGACCAAAAAACACCTGCAGGTCACAGGTTATGGCATTAATGGAAGTGGTGACGTGAATGACCTGTGGCAGGTGGAGGTGTGTGGAGGAAGGAAGGGAGATCCAGTGAAGGTGCTGCGCAGTAAAGTGCGTTTTCTTCATCGCGCCACAGGCTGTGTGCTCTGCTCCTCTGGAAAGACCCTTCCCAAATGGGGATGGGAGCAAGTGGAGGTCACATGCAGCCCGTATGTCAAAGAGACCCCAAATTCGCAGTGGAACATTGAGGACCACATCAACCCTAAACTGCCCAACATCAGTCTTGCAGTACTCAAACCCACTTTCCTGGAGATCCTCTGGGAGTCTCATATTGTGATGATCAGGGGAAACAGTGGTTTGAAGCCCAAAGACAACGAGATGAACTCTAAACCCTGGCACTGGCCCATTAACTATCAGGGATTAAGGTTTTCTGGAGTGAATGAAACTGAATACCGTGTTTATCTCCTTGGAAACCCTGTCATTTGGTGGCTGAACTTGTTAAGTCTGGCTCTATTTGTAATCCTGCTGACGGTGGCTTCATTAGCCGTGCAGAGAAGAGTGAAGATGGAGGGAATGATGAAAGTGCATTGTCACACACTTATGGAGGGTGGCGGGATGCTGTTTTTGGGTTGGCTGTTACACTATCTCCCATTCTACATCATGGGTCGCATACTCTACTACCATCATTACTTTCCTGCCATGATGTTCAGCAGTATGCTAACAGGTATTACTCTGGACATCCTCCTTCAGAATTTGCAGCTTCTCTTTAGCTCATCTTTATCTCATTACCTGATGAGGGGAGGTCAGTCGGTGCTCCTCTTAGGGTTTATCTACAGCTTTTATCTTTTCCACCCTCTCTCCTATGGCATGAGAGGGCCGCTGGCACATGACTCTGCCTCCTCCATGGCCGGTCTCAGGTGGATGGAATCCTGGGAGTTTTAGACAAACGTTTTAAGTGTTTTCACTtgataaaatgttttcaaaactatttcatttGTTACATGTTCACATTTCCGTGTTGAAGGACGGCATTTAGTCTGATTTTAGGCTGTTGAAAATTTTCAAATAgtatttttgtattgtataaaattaCGATATTTTACAGTCatgtattttacataaaaatctgATGTTGTGAAACAGCTGTAGCTGGACtgaaataaattgataaaaaaaacattgaagtgCCTTTCTAGTTTTGAAGATGCTGATGTATAAAGCATTAacctttttgtttgtgtttaaatcATTTCAGTTTGAGAATGTTTAATAgcatttctgttttaaaactgtaatgtaatgagcagtcTTTCCTGAAAATTTCAGTTGAGTTCGTGTTTGAAttgttgataaaaaaattgtttgcaataTTGTCTTTAAATTATTGCCTTAAATGCAAATTGTAAACAGACT
>TCONS_00024069
GTTAAGGACAACAACATGAGCTGGAAAACGTCAGGAGCTTTGCAATAAAATCTAACAGAATATCTCATTCGGCACGATGTTGAACACCACCAGCCCAAAAGCTCTTCAATCCTGTGaggaataatgttttatttaccgtTACTGAACTCTGCCATTGTGTTCATAGTGGTTTTGTTACTCACCCATTACTGTCCTCTTCATCTTCAAGAATGGACGTCAGACCGAAGGAGAATTTCTCTCAAAGACAAGACACATCCGCTGTAAGACATCGAAAAACATGTAAGGTAAACGAGAGGGCTGAGATTCCTTCCCAGCCTCACAATGGGACTATTAATGGTGTAAATAAGAGGATCACCAAACGAGAAGGAGGAGAACACATCAGTTCACCCAGCAGAGATGCTCATGTGCCCGTTTTTATTTTGGCTCTGGTGATAGTGTTGTCTGTATCTACACGCTTTTACAAGATCACTGAGCCTCCTCATGTATGTTGGGATGAGACTCATTTTGGGAAAATGGGAAGCTATTACATTAATCGCACCTTCTTCTTTGATGTCCATCCGCCCCTTGGAAAGATGCTGATCGGCCTCGCTGGATACTTGACAGGTTACGATGGGACCTTTCCCTTCATAAAGCCAGGGGACAAATATGAGCACCACAATTACTGGGGGATGAGAGCGTTCTGTGCTGCTCTTGGTTCCTGTTTGCCTCCTTTTGCCTTTCTTGTTGTCCTGGAGCTCTCTCAGTCTTCAACAGCAGCGCTCATCGCAGCCTCTCTGCTCATCTTCGACACTGGTTGCATCACCCTGTCTCAGTATATCCTGCTGGATCCCATTCTGATGTTTTTCATCATGGGCTCGGTTCTGTGCATGGTCAAATTCAACACGCAAAGACTCGGGCCTTTCAGCTTCTCCTGGTGGTTCTGGCTGCTTCTGACAGGGCTATGCCTCTCTGGGTCTCTTGGTGTAAAGTTTGTGGGGCTGTTTGTCATTCTCTTGGTTGGAATCAACACAGCGCTTGATCTTTGGAGACTGCTTGGGGACCTCAGCTTATCTCTGGTGGATTTTGGGAAGCACTTACTAGCTCGAGTTTTTGGGTTGATAATGCTTCCGTTGTTCTTGTACACGACAATATTCGCCATTCATTTCATTGTCTTAAACAGGAGTGGTCCCGGAGATGGTTTCTTCAGCTCTGCGTTTCAGTCTCGCTTGATTGGAAACAATCTACACAACGCCTCCATGCCAGAGTATCTGGCATATGGCTCAGTCATAACAGTTAAAAATCTGCGAATTGCAGGAGGATATTTGCACTCTCACTGGCACCTTTACCCGGAGGGGGTTGGAGCTCACCAGCAGCAGGTTACTGCCTATTTACACAAAGATTATAACAACCTGTGGTTGGTCAAGAGACTTGACAACTCTGACGATCTCACAGGCTCACCAGAGCTCGTCCGTCATGGTGACATCATTAGACTGGAGCATAAAGAAACTACAAGAAATCTTCATAGTCATTTCCATGAAGCGCCCCTGACCAAAAAACACCTGCAGGTCACAGGTTATGGCATTAATGGAAGTGGTGACGTGAATGACCTGTGGCAGGTGGAGGTGTGTGGAGGAAGGAAGGGAGATCCAGTGAAGGTGCTGCGCAGTAAAGTGCGTTTTCTTCATCGCGCCACAGGCTGTGTGCTCTGCTCCTCTGGAAAGACCCTTCCCAAATGGGGATGGGAGCAAGTGGAGGTCACATGCAGCCCGTATGTCAAAGAGACCCCAAATTCGCAGTGGAACATTGAGGACCACATCAACCCTAAACTGCCCAACATCAGTCTTGCAGTACTCAAACCCACTTTCCTGGAGATCCTCTGGGAGTCTCATATTGTGATGATCAGGGGAAACAGTGGTTTGAAGCCCAAAGACAACGAGATGAACTCTAAACCCTGGCACTGGCCCATTAACTATCAGGGATTAAGGTTTTCTGGAGTGAATGAAACTGAATACCGTGTTTATCTCCTTGGAAACCCTGTCATTTGGTGGCTGAACTTGTTAAGTCTGGCTCTATTTGTAATCCTGCTGACGGTGGCTTCATTAGCCGTGCAGAGAAGAGTGAAGATGGAGGGAATGATGAAAGTGCATTGTCACACACTTATGGAGGGTGGCGGGATGCTGTTTTTGGGTTGGCTGTTACACTATCTCCCATTCTACATCATGGGTCGCATACTCTACTACCATCATTACTTTCCTGCCATGATGTTCAGCAGTATGCTAACAGGTATTACTCTGGACATCCTCCTTCAGAATTTGCAGCTTCTCTTTAGCTCATCTTTATCTCATTACCTGATGAGGGGAGGTCAGTCGGTGCTCCTCTTAGGGTTTATCTACAGCTTTTATCTTTTCCACCCTCTCTCCTATGGCATGAGAGGGCCGCTGGCACATGACTCTGCCTCCTCCATGGCCGGTCTCAGGTGGATGGAATCCTGGGAGTTTTAGACAAACGTTTTAAGTGTTTTCACTtgataaaatgttttcaaaactatttcatttGTTACATGTTCACATTTCCGTGTTGAAGG
>TCONS_00024070
TTAGTGTCCACAAATGTTGGAATTTGTGGCAGTAAGAGTGAGCTAAAAATGTAGACATTACCCTTCATACTATTTAATTACATCTTAAAGTATTTTTTCAATAGAAAAAAGTTATCTATAACTCCAACATAAATAACCTTTAACTGTATTGTTGATTATTTTGGATCTTAATTTGTGATCAAATAAATTAAGTCTTTGTATCATAATAGACCTAATCCAAAAACTCTTTGGAAGTGTATATGTACATTTAAGACTTTATTATTTTAGGATGTCTTTTGTGTTTTTCTAAGAATGATAAATCATTTTCCTATCTACATCCATTTTGCATCTTAATTTGTGTAGGTTACTGCCTATTTACACAAAGATTATAACAACCTGTGGTTGGTCAAGAGACTTGACAACTCTGACGATCTCACAGGCTCACCAGAGCTCGTCCGTCATGGTGACATCATTAGACTGGAGCATAAAGAAACTACAAGAAATCTTCATAGTCATTTCCATGAAGCGCCCCTGACCAAAAAACACCTGCAGGTCACAGGTTATGGCATTAATGGAAGTGGTGACGTGAATGACCTGTGGCAGGTGGAGGTGTGTGGAGGAAGGAAGGGAGATCCAGTGAAGGTGCTGCGCAGTAAAGTGCGTTTTCTTCATCGCGCCACAGGCTGTGTGCTCTGCTCCTCTGGAAAGACCCTTCCCAAATGGGGATGGGAGCAAGTGGAGGT

Function

symbol description
pomt2 Enables dolichyl-phosphate-mannose-protein mannosyltransferase activity. Acts upstream of or within protein O-linked mannosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including brain; fin bud; liver; muscle; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in lissencephaly and muscular dystrophy (multiple). Orthologous to human POMT2 (protein O-mannosyltransferase 2).

GO:

id name namespace
GO:0035269 protein O-linked mannosylation biological_process
GO:0006493 protein O-linked glycosylation biological_process
GO:0071712 ER-associated misfolded protein catabolic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004169 dolichyl-phosphate-mannose-protein mannosyltransferase activity molecular_function
GO:0000030 mannosyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-1002 Enables dolichyl-phosphate-mannose-protein mannosyltransferase activity. Acts upstream of or within protein O-linked mannosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including brain; fin bud; liver; muscle; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in lissencephaly and muscular dystrophy (multiple). Orthologous to human POMT2 (protein O-mannosyltransferase 2).

Ensembl:

ensembl_id ENSDARG00000055027

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024068 False 2881 mRNA 0.44 22 31696657 31712041
TCONS_00024069 False 2563 mRNA 0.47 21 31697045 31712016
TCONS_00024070 True 722 lncRNA 0.38 5 31702341 31705509

Neighbor

gene id symbol gene type direction distance location
XLOC_012214 lin52 coding downstream 1400 31667625 ~ 31695257 (-)
XLOC_012213 vsx2 coding downstream 36987 31652640 ~ 31659670 (-)
XLOC_012212 znf839 coding downstream 56812 31623356 ~ 31639845 (-)
XLOC_012211 si:dkey-170l10.1 coding downstream 84965 31606635 ~ 31611692 (-)
XLOC_012210 rpap1 coding downstream 116924 31535764 ~ 31579733 (-)
XLOC_012216 dtd2 coding upstream 5151 31717192 ~ 31719071 (-)
XLOC_012217 abraxas2 coding upstream 93734 31805775 ~ 31819837 (-)
XLOC_012218 NA coding upstream 415856 32127897 ~ 32136128 (-)
XLOC_012219 CR407546.1 coding upstream 534088 32246129 ~ 32246255 (-)
XLOC_012220 klf11b coding upstream 653900 32365941 ~ 32370047 (-)
XLOC_012208 BX539317.1 non-coding downstream 312109 31384434 ~ 31384548 (-)
XLOC_012203 BX571712.2 non-coding downstream 511414 31181950 ~ 31185243 (-)
XLOC_012201 BX571712.1 non-coding downstream 599116 31096326 ~ 31097541 (-)
XLOC_012193 NA non-coding downstream 1103599 30573572 ~ 30593058 (-)
XLOC_012190 NA non-coding downstream 1286898 30398949 ~ 30409759 (-)
XLOC_012228 NA non-coding upstream 1421778 33133819 ~ 33138376 (-)
XLOC_012229 NA non-coding upstream 1433553 33145594 ~ 33162478 (-)
XLOC_012230 AL590149.1 non-coding upstream 1494739 33206780 ~ 33231714 (-)

Expression


Co-expression Network