G394293


Basic Information

Item Value
gene id G394293
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000222
NCBI id null
chromosome length 845821
location 109188 ~ 112123 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU451651
CCTGAGCTCCTGCTGCGCAGCCGTGGAGTCGAGCGTGTCCTCCAGCTCGGTCTTCAGCGCCTCCAGCTCCTCTCCGAGGTCCCGGCGGTGTTTCTCGGCTTTGGTGCGGGCGACTCGCTCTAGCTCCAGGTCTTCCTGAAGTTCGCTCAGCTGAGCCTCCAGCTCACGGATCTTCTTCTGGGCCAGATTCTTCTGAGCCGCTTCCTCCTCGATCCTGTTGGGAAATCACTGTCAGTCACGAGCTCTGATCTTTCATTCAGATGGATTAATGCAGTGGTTTGTGATTGGCTCCTGTAGGTCAGCTGACACACACACCTGGCCAGCGCCTCCTGCAGCTCCTCCTCCTTCTTGGCGAGTTGCGCTCTGAGTTCGGCGATCTGAGCCTGCAGCTCTGCGATCTGGTCGTGTAGCTCGGTGGAGTCTCCCTCCAGCTTCCTGCGGTTCTTCTCCAGCTCCTGACGCTGCTTCTCCTCGCGCCGCAGACGGTCCTCCAGGTCGGTGATCATGGCCTCGTGTTTGTTCTTGAGCTTCTGCAGGCTCTTAGACTTCTCCTCCTCCTCGGCCAGGTTTGTGGTGAACTCAGAGATTCGCTCCTCCATAAGCTTCTTCTCCTGCATGAGCAAAACGCAGATGAACAGTGAGGAAAAACACCAGCGTTTAAACACAGCATCAAAACCAGCACGTGTGACGACAGACCTTGGACAACTTGTTGTTCTGGTCATCCAGGATCATCACGTCATCCTCGGTTTTCTTGAGCTTTGCCTCCAGCGTGACCTTCTCCAGCTGCAGCTTCTGTCGGGCGGCTTCCTCCTCGTCCAGCTGCTGCTCCAGATCCTGTTGGACCAAAACACAGACATTCCTCATTCAACCAATCGCAGAGACACACCGGAGCCCGTTTCTGAAAGCAAACGCTGGTTACCGCGATGTTCTGCTGCATCTTCTTCTTCTCTGTCTGCAGATGATTGGCTCGCTCCTCCTCTTCCTCCACGCGAGCCTCCAGGTCATGCAGAATCTCCTCCAGCTCCTGTTTCTTGGCCACCAGGCGGTTCCTCATCTCGTCAGCCTCGGCGCACAGATCCATCTCTGCCTGCAGCTGCTCCTGCAGCGCCATCTTCTCCGCATTCAGCTGGAGAAACAATCACAGTGTTCACATTCC
>TU451652
CTCACTTATAAGTCGCTTTGGATAAATTATTAAATCTAAAAGTACAATAAATGTTGAATGATGATTTTATTGCCCCGATCATTTACAGCAGGATAAAGCATAAAGTTTTCTGCACATGTTACAAACATCATTAGGATTTGCAGCGTTAGTAAGTAAGAGCGTCTGCACTCACCCTCCAGGTCGGTGATCATGGCCTCGTGTTTGTTCTTGAGCTTCTGCAGGCTCTTAGACTTCTCCTCCTCCTCGGCCAGGTTTGTGGTGAACTCAGAGATTCGCTCCTCCATAAGCTTCTTCTCCTTGGACAACTTGTTGTTCTGGTCATCCAGGATCATCACGTCATCCTCGGTTTTCTTGAGCTTTGCCTCCAGCGTGACCTTCTCCAGCTGCAGCTTCTGTCGGGCGGCTTCCTCCTCGTCCAGCTGCTGCTCCAGATCCGCGATGTTCTGCTGCATCTTCTTCTTCTCTGTCTGCAGATGATTGGCTCGCTCCTCCTCTTCCTCCACGCGAGCCTCCAGGTCATGCAGAATCTCCTCCAGCTCCTGTTTCTTGGCCACCAGGCGGTTCCTCATCTCGTCAGCCTCGGCGCACAGATCCATCTCTGCCTGCAGCTGCTCCTGCAGCGCCATCTTCTCCGCATTCAGCTGGAGAAACAATCACAGTGTTCACATTCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU451651 False 1156 TUCP 0.56 2 109188 112123
TU451652 True 671 lncRNA 0.50 3 111283 112123

Neighbor

gene id symbol gene type direction distance location
CI01000222_00167369_00168395 NA coding downstream 54074 166197 ~ 168752 (+)
CI01000222_00200608_00202045 NA coding downstream 88485 200608 ~ 202137 (+)
CI01000222_00214433_00217905 NA coding downstream 102310 214433 ~ 217919 (+)
CI01000222_00232414_00239331 NA coding downstream 120075 232198 ~ 239410 (+)
CI01000222_00255680_00256841 NA coding downstream 143489 255612 ~ 256846 (+)
G394292 NA non-coding upstream 8427 54851 ~ 102856 (+)
G394299 NA non-coding upstream 18072 59611 ~ 93211 (+)
G394320 NA non-coding upstream 73124 37488 ~ 38159 (+)
G394314 NA non-coding upstream 92256 18544 ~ 19027 (+)
G394312 NA non-coding upstream 96751 13153 ~ 14532 (+)
G394297 NA non-coding downstream 22411 134534 ~ 158179 (+)
G394348 NA non-coding downstream 81335 193458 ~ 193674 (+)
G394362 NA non-coding downstream 90454 202577 ~ 202889 (+)
G394376 NA non-coding downstream 120740 232863 ~ 242720 (+)
G394303 NA other upstream 68436 31433 ~ 42847 (+)
G394294 NA other downstream 19921 132044 ~ 148910 (+)
G394482 NA other downstream 349866 461989 ~ 462466 (+)
G394559 NA other downstream 638224 750347 ~ 752670 (+)

Expression


Co-expression Network