G394297


Basic Information

Item Value
gene id G394297
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000222
NCBI id null
chromosome length 845821
location 134534 ~ 158179 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU451659
TATATATATATATATTATATATATATATATATATATATATATATATANNNNNNNNNNNNNNNAACCAACAGTCTGAGTTAAATATTGTACAGTTGCTTTATTCATAATTTCACTTGACTAGTTGGTTATATTACAGTTTATATGAATTAAAGTCTAAACATCATCAATCCCATGCATCCCGCATGAAATTCACAGTCATATCCAAAAAAAGAAAGAAAACCAAACGGAGACAAACACATGTCTGTAATCATCACACACTTTCACATTAGTAGGCATTCAGGTGCAAAAGGATGGAGAGCGAGAGGAAGGTCGCCCTCGTGTGGACCGGATGAGTCGTACGGCCGATCAGTTCTCCTCCAAAGCGGCTGAATGATGTCCGAGAACACTTTACTACATTGTTACCGCAGTAAACATGGTGCACTGCCCCAGACCCTCTAAAAAACATGTAACGACACACACACATACAGTTAATGAAAGCAGGACAGATGGTGAAGCAGGTTGCAGTTGTCTGTGTATGTAATTAGATGTAATGGAGTTTCCAGCAGGAGGTGGGTGGGACTAGAGGGGTGGTGACTGACAGCTTCACTGTCCAATCAGCTTCTGCACAAAAGAATCCAGCTGGTCTTCATCTTTGATGCCCACAAACTGGTCGATGACATCGCCGCCCCGCATGGCAATCACCGTGGGAACGGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU451659 True 693 lncRNA 0.41 2 134534 158179

Neighbor

gene id symbol gene type direction distance location
CI01000222_00167369_00168395 NA coding downstream 8018 166197 ~ 168752 (+)
CI01000222_00200608_00202045 NA coding downstream 42429 200608 ~ 202137 (+)
CI01000222_00214433_00217905 NA coding downstream 56254 214433 ~ 217919 (+)
CI01000222_00232414_00239331 NA coding downstream 74019 232198 ~ 239410 (+)
CI01000222_00255680_00256841 NA coding downstream 97433 255612 ~ 256846 (+)
G394293 NA non-coding upstream 22411 109188 ~ 112123 (+)
G394292 NA non-coding upstream 31678 54851 ~ 102856 (+)
G394299 NA non-coding upstream 41323 59611 ~ 93211 (+)
G394320 NA non-coding upstream 96375 37488 ~ 38159 (+)
G394314 NA non-coding upstream 115507 18544 ~ 19027 (+)
G394348 NA non-coding downstream 35279 193458 ~ 193674 (+)
G394362 NA non-coding downstream 44398 202577 ~ 202889 (+)
G394376 NA non-coding downstream 74684 232863 ~ 242720 (+)
G394366 NA non-coding downstream 83430 241609 ~ 251264 (+)
G394303 NA other upstream 91687 31433 ~ 42847 (+)
G394482 NA other downstream 303810 461989 ~ 462466 (+)
G394559 NA other downstream 592168 750347 ~ 752670 (+)

Expression


Co-expression Network