Gene
RNA
| Item | Value |
|---|---|
| gene id | G394395 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000222 |
| NCBI id | null |
| chromosome length | 845821 |
| location | 270170 ~ 270521 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU451773 | False | 228 | lncRNA | 0.41 | 1 | 270170 | 270397 |
| TU451774 | True | 352 | lncRNA | 0.32 | 1 | 270170 | 270521 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000222_00255680_00256841 | NA | coding | upstream | 13324 | 255612 ~ 256846 (+) |
| CI01000222_00232414_00239331 | NA | coding | upstream | 30760 | 232198 ~ 239410 (+) |
| CI01000222_00214433_00217905 | NA | coding | upstream | 52251 | 214433 ~ 217919 (+) |
| CI01000222_00200608_00202045 | NA | coding | upstream | 68033 | 200608 ~ 202137 (+) |
| CI01000222_00167369_00168395 | NA | coding | upstream | 101418 | 166197 ~ 168752 (+) |
| CI01000222_00315211_00317790 | NA | coding | downstream | 44690 | 315211 ~ 318086 (+) |
| CI01000222_00328639_00330158 | NA | coding | downstream | 58118 | 328639 ~ 330374 (+) |
| CI01000222_00531504_00560379 | NA | coding | downstream | 260634 | 531155 ~ 560714 (+) |
| CI01000222_00584243_00585193 | NA | coding | downstream | 313480 | 584001 ~ 585218 (+) |
| CI01000222_00631228_00636853 | NA | coding | downstream | 360707 | 631228 ~ 636853 (+) |
| G394394 | NA | non-coding | upstream | 990 | 268944 ~ 269180 (+) |
| G394366 | NA | non-coding | upstream | 18906 | 241609 ~ 251264 (+) |
| G394376 | NA | non-coding | upstream | 27450 | 232863 ~ 242720 (+) |
| G394362 | NA | non-coding | upstream | 67281 | 202577 ~ 202889 (+) |
| G394352 | NA | non-coding | downstream | 13477 | 283998 ~ 287078 (+) |
| G394396 | NA | non-coding | downstream | 17487 | 288008 ~ 288342 (+) |
| G394400 | NA | non-coding | downstream | 27367 | 297888 ~ 298123 (+) |
| G394401 | NA | non-coding | downstream | 28236 | 298757 ~ 298991 (+) |
| G394413 | NA | non-coding | downstream | 39810 | 310331 ~ 310564 (+) |
| G394294 | NA | other | upstream | 121260 | 132044 ~ 148910 (+) |
| G394293 | NA | other | upstream | 158047 | 109188 ~ 112123 (+) |
| G394303 | NA | other | upstream | 227323 | 31433 ~ 42847 (+) |
| G394482 | NA | other | downstream | 191468 | 461989 ~ 462466 (+) |
| G394559 | NA | other | downstream | 479826 | 750347 ~ 752670 (+) |
