XLOC_012221 (grhl1)


Basic Information

Item Value
gene id XLOC_012221
gene name grhl1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 32391056 ~ 32426413 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024076
atttcaaagcacttcacaggacctttaaaagtTAGAAGTTATATATTGTCTGTTTTGGTGTTATAAATTACGATACATAAACATGgCATTCACAGCTGAGGACTCGGAGGAGGGCTCGGCAATGAAGAGATTACCTTATACTGAGGAGGAGTTTGGATCGCCTCCTAATAAACTGGCACGGATGGATGAGCCCAAAAGAGTTTTGCTGTATGTGCGCCGGGAGACGGAGGAGGTGTTTGATGCCCTCATGCTAAAAACTCCCACTCTGAAAGGCCTGGTGGAAGCGATTTCAGAGAAGTATGAAGTTTCTCTTGAGAAAATCGGAAAGGTCTACAAGAAATGCAAGAAAGGgatctTAGTAAACATGGACGACAACATCATCAAGCACTACTCGAACGAGGACACCTTCCAGATCCAGATGGAGGAGATGGGAGGAATGATCAAGCTCACGCTGACAGAGATTGAGTGATTTTCAGCTCCTTCTACAGACTGGTTTACACACATCTCTCTCCTCTCATCTTTCACTACAGTCTAATGAATAGGGACGAACTTGTATATGCGAACTTAAGTACTTTAAAATGCTTCAGGTATAAGTACTTAAACCGAGTGGT
>TCONS_00024079
GGTGGTTTGTAGTAGAAATAGAAGCCTAGAGCCCCGGAGAGTCTTGTTTTTCACTTTGTCCTTGTTCGTTTTGTGCAGTCGGGGCAGATGTCAAGGTGCCGCTCCTGCACAAGCGCACAGACATGACAGTGTTCAGGACACTGACGGATTTCGAGACGCAGCCTGTCCTTTTCATCCCAGACATCCACTTCTCTACCTTCCAGCGACATgCATTCACAGCTGAGGACTCGGAGGAGGGCTCGGCAATGAAGAGATTACCTTATACTGAGGAGGAGTTTGGATCGCCTCCTAATAAACTGGCACGGATGGATGAGCCCAAAAGAGTTTTGCTGTATGTGCGCCGGGAGACGGAGGAGGTGTTTGATGCCCTCATGCTAAAAACTCCCACTCTGAAAGGCCTGGTGGAAGCGATTTCAGAGAAGTATGAAGTTTCTCTTGAGAAAATCGGAAAGGTCTACAAGAAATGCAAGAAAGGgatctTAGTAAACATGGACGACAACATCATCAAGCACTACTCGAACGAGGACACCTTCCAGATCCAGATGGAGGAGATGGGAGGAATGATCAAGCTCACGCTGACAGAGATTGAGTGATTTTCAGCTCCTTCTACAGACTGGTTTACACACATCTCTCTCCTCTCATCTTTCACTACAGTCTAATGAATAGGGACGAACTTGTATATGCGAACTTAAGTACTTTAAAATGCTTCAGGTATAAGTACTTAAACCGAGTGGT
>TCONS_00024077
AACCCGTTCTCGTACAGGCAATTCTAACGCAGCCCTCATCCCATCCTGAAAACGTTGCTCCATACAAGAAGAAGAAGGATCGGATTTACAGTACCAACTAGAAAGTCCAGTTCGACCATAAGAGATGTCACAGGAGCATGAAAATAAGCGGGCAGTGCTCGTGCTGCCCAATGATCCTGCGTACAACCAGCGGCGGCCTTACACCAGTGAGGATGAGGCCTGGAAGTCGTTCCTGGAGAATCCGCTCACAGCCGCCACCAAAGCCATGATGAGCATTAATGGAGACGAGGACAGCGCTGCGGCTCTGGGTCTGCTGTATGATTACTACAAGGTGCCACGGGACAAGAGAACAATATCCCAGCAAAAGACTGACGTCCTGGGCTCTGATGTGGATCCCAACAAAAGGAACATGTTGACCCCTCTTCAAGAGACATCAATGCAGCTAGGGGACAACAGGATCCAGGTCCTAAAAGGGGTCCCCCTGAACATTGTCCTGCCAGGAAACCAACATGTCCAAGATAAGAGAGGTCTCTTTCCCAGCCCTGACACTACAGTGACTGTGTCGATCGCTCCTGTAGCAAGCAACTCAGTGAAAACCGAGGGTCCATCACATGGTTTCTCTGTCACTGTCCCGAACCCCCACTGCGCAGAGCCAGACAGCCACACGGTGGTGTTCGACCGCCAGCTGCCCCACAACCAGTTCAGCCCAAACACACAGCCACGCACCCCAGACTCCACCTTCCCAGAAAACCCAGACGTGTTCTCGTTCCCAGGGGATCTCCAGTTACGCATGGGTCCCATCACGCAGGACGACTACGGCACTTTCGACACAGTGTCCGGGAATAATTTTGAATACATATTAGAAGCCTCCAAGTCACTCAGACAGAAGTCCGGTGATGGCACCATGACGTACCTCAATAAAGGCCAGTTTTATCCAATCACACTCAGGGAAACCGACAATGGTAAACTGCTGCAGGGGCCCATCTGTAAAGTCAGGAGTGTGGTGATGGTAGTGTTTGGAGAGGAGAAATCCAGAGATGACCAACTGAAGCACTGGAAATACTGGCACTCGAGGCAGCACACGGCCAAGCAGAGATGCATTGATATCGCGGACTACAAAGAAAGTTTCAACACCATCAGTAATATTGAGGAGATTTCATACAATGCCATTTCATTCACATGGGACATCAGCGAGGAAGCAAAGATCTTCATCTCGGTGAACTGCCTGAGCACAGACTTCTCGTCTCAGAAAGGAGTGAAAGGCCTGCCGCTGAACATACAGATCGACACCTACAGCTACAACAACCGCAGTAACAAGCCCATCCACCGCGCTTACTGCCAGATTAAAGTCTTCTGCGACAAGGGTGCCGAGCGCAAGATTCGTGACGAGGAGAGGAAACAGTCCCGGAGGAAGGGCAAGTGTCCTGACGTCAACCCTCCTTTGGGAAACTTCGGGGCAGATGTCAAGGTGCCGCTCCTGCACAAGCGCACAGACATGACAGTGTTCAGGACACTGACGGATTTCGAGACGCAGCCTGTCCTTTTCATCCCAGACATCCACTTCTCTACCTTCCAGCGACATgCATTCACAGCTGAGGACTCGGAGGAGGGCTCGGCAATGAAGAGATTACCTTATACTGAGGAGGAGTTTGGATCGCCTCCTAATAAACTGGCACGGATGGATGAGCCCAAAAGAGTTTTGCTGTATGTGCGCCGGGAGACGGAGGAGGTGTTTGATGCCCTCATGCTAAAAACTCCCACTCTGAAAGGCCTGGTGGAAGCGATTTCAGAGAAGTATGAAGTTTCTCTTGAGAAAATCGGAAAGGTCTACAAGAAATGCAAGAAAGGgatctTAGTAAACATGGACGACAACATCATCAAGCACTACTCGAACGAGGACACCTTCCAGATCCAGATGGAGGAGATGGGAGGAATGATCAAGCTCACGCTGACAGAGATTGAGTGATTTTCAGCTCCTTCTACAGACTGGTTTACACACATCTCTCTCCTCTCATCTTTCACTACAGTCTAATGAATAGGGACGAACTTGTATATGCGAACTTAAGTAC
>TCONS_00024078
AAAAGCGAGAAAAGCCAACAAAACCCGTTCTCGTACAGGCAATTCTAACGCAGCCCTCATCCCATCCTGAAAACGTTGCTCCATACAAGAAGAAGAAGGATCGGATTTACAGTACCAACTAGAAAGTCCAGTTCGACCATAAGAGATGTCACAGGAGCATGAAAATAAGCGGGCAGTGCTCGTGCTGCCCAATGATCCTGCGTACAACCAGCGGCGGCCTTACACCAGTGAGGATGAGGCCTGGAAGTCGTTCCTGGAGAATCCGCTCACAGCCGCCACCAAAGCCATGATGAGCATTAATGGAGACGAGGACAGCGCTGCGGCTCTGGGTCTGCTGTATGATTACTACAAGGTGCCACGGGACAAGAGAACAATATCCCAGCAAAAGACTGACGTCCTGGGCTCTGATGTGGATCCCAACAAAAGGAACATGTTGACCCCTCTTCAAGAGACATCAATGCAGCTAGGGGACAACAGGATCCAGGTCCTAAAAGGGGTCCCCCTGAACATTGTCCTGCCAGGAAACCAACATGTCCAAGATAAGAGAGGTCTCTTTCCCAGCCCTGACACTACAGTGACTGTGTCGATCGCTCCTGTAGCAAGCAACTCAGTGAAAACCGAGGGTCCATCACATGGTTTCTCTGTCACTGTCCCGAACCCCCACTGCGCAGAGCCAGACAGCCACACGGTGGTGTTCGACCGCCAGCTGCCCCACAACCAGTTCAGCCCAAACACACAGCCACGCACCCCAGACTCCACCTTCCCAGAAAACCCAGACGTGTTCTCGTTCCCAGGGGATCTCCAGTTACGCATGGGTCCCATCACGCAGGACGACTACGGCACTTTCGACACAGTGTCCGGGAATAATTTTGAATACATATTAGAAGCCTCCAAGTCACTCAGACAGAAGTCCGGTGATGGCACCATGACGTACCTCAATAAAGGCCAGTTTTATCCAATCACACTCAGGGAAACCGACAATGGTAAACTGCTGCAGGGGCCCATCTGTAAAGTCAGGAGTGTGGTGATGGTAGTGTTTGGAGAGGAGAAATCCAGAGATGACCAACTGAAGCACTGGAAATACTGGCACTCGAGGCAGCACACGGCCAAGCAGAGATGCATTGATATCGCGGACTACAAAGAAAGTTTCAACACCATCAGTAATATTGAGGAGATTTCATACAATGCCATTTCATTCACATGGGACATCAGCGAGGAAGCAAAGATCTTCATCTCGGTGAACTGCCTGAGCACAGACTTCTCGTCTCAGAAAGGAGTGAAAGGCCTGCCGCTGAACATACAGATCGACACCTACAGCTACAACAACCGCAGTAACAAGCCCATCCACCGCGCTTACTGCCAGATTAAAGTCTTCTGCGACAAGGGTGCCGAGCGCAAGATTCGTGACGAGGAGAGGAAACAGTCCCGGAGGAAGGTCGGGGCAGATGTCAAGGTGCCGCTCCTGCACAAGCGCACAGACATGACAGTGTTCAGGACACTGACGGATTTCGAGACGCAGCCTGTCCTTTTCATCCCAGACATCCACTTCTCTACCTTCCAGCGACATgCATTCACAGCTGAGGACTCGGAGGAGGGCTCGGCAATGAAGAGATTACCTTATACTGAGGAGGAGTTTGGATCGCCTCCTAATAAACTGGCACGGATGGATGAGCCCAAAAGAGTTTTGCTGTATGTGCGCCGGGAGACGGAGGAGGTGTTTGATGCCCTCATGCTAAAAACTCCCACTCTGAAAGGCCTGGTGGAAGCGATTTCAGAGAAGTATGAAGTTTCTCTTGAGAAAATCGGAAAGGTCTACAAGAAATGCAAGAAAGGgatctTAGTAAACATGGACGACAACATCATCAAGCACTACTCGAACGAGGACACCTTCCAGATCCAGATGGAGGAGATGGGAGGAATGATCAAGCTCACGCTGACAGAGATTGAGTGATTTTCAGCTCCTTCTACAGACTGGTTTACACACATCTCTCTCCTCTCATCTTTCACTACAGTCTAATGAATAGGGACGAACTTGTATATGCGAACTTAAGTAC
>TCONS_00024080
ATTGAGGAGATTTCATACAATGCCATTTCATTCACATGGGACATCAGCGAGGAAGCAAAGATCTTCATCTCGGTGAACTGCCTGAGCACAGACTTCTCGTCTCAGAAAGGAGTGAAAGGCCTGCCGCTGAACATACAGATCGACACCTACAGCTACAACAACCGCAGTAACAAGCCCATCCACCGCGCTTACTGCCAGATTAAAGTCTTCTGCGACAAGGGTGCCGAGCGCAAGATTCGTGACGAGGAGAGGAAACAGTCCCGGAGGAAGGTCGGGGCAGATGTCAAGGTGCCGCTCCTGCACAAGCGCACAGACATGACAGTGTTCAGGACACTGACGGATTTCGAGACGCAGCCTGTCCTTTTCATCCCAGACATCCACTTCTCTACCTTCCAGCGACATgCATTCACAGCTGAGGACTCGGAGGAGGGCTCGGCAATGAAGAGATTACCTTATACTGAGGAGGAGTTTGGATCGCCTCCTAATAAACTGGCACGGATGGATGAGCCCAAAAGAGTTTTGCTGTATGTGCGCCGGGAGACGGAGGAGGTGTTTGATGCCCTCATGCTAAAAACTCCCACTCTGA
>TCONS_00024081
AACCCGTTCTCGTACAGGCAATTCTAACGCAGCCCTCATCCCATCCTGAAAACGTTGCTCCATACAAGAAGAAGAAGGATCGGATTTACAGTACCAACTAGAAAGTCCAGTTCGACCATAAGAGATGTCACAGGAGCATGAAAATAAGCGGGCAGTGCTCGTGCTGCCCAATGATCCTGCGTACAACCAGCGGCGGCCTTACACCAGTGAGGATGAGGCCTGGAAGTCGTTCCTGGAGAATCCGCTCACAGCCGCCACCAAAGCCATGATGAGCATTAATGGAGACGAGGACAGCGCTGCGGCTCTGGGTCTGCTGTATGATTACTACAAGGTGCCACGGGACAAGAGAACAATATCCCAGCAAAAGACTGACGTCCTGGGCTCTGATGTGGATCCCAACAAAAGGAACATGTTGACCCCTCTTCAAGAGACATCAATGCAGCTAGGGGACAACAGGATCCAGGTCCTAAAAGGGGTCCCCCTGAACATTGTCCTGCCAGGAAACCAACATGTCCAAGATAAGAGAGGTCTCTTTCCCAGCCCTGACACTACAGTGACTGTGTCGATCGCTCCTGTAGCAAGCAACTCAGTGAAAACCGAGGGTCCATCACATGGTTTCTCTGTCACTGTCCCGAACCCCCACTGCGCAGAGCCAGACAGCCACACGGTGGTGTTCGACCGCCAGCTGCCCCACAACCAGTTCAGCCCAAACACACAGCCACGCACCCCAGACTCCACCTTCCCAGAAAACCCAGACGTGTTCTCGTTCCCAGGGGATCTCCAGTTACGCATGGGTCCCATCACGCAGGACGACTACGGCACTTTCGACACAGTGTCCGGGAATAATTTTGAATACATATTAGAAGCCTCCAAGTCACTCAGACAGAAGTCCGGTGATGGCACCATGACGTACCTCAATAAAGGCCAGTTTTATCCAATCACACTCAGGGAAACCGACAATGGTAAACTGCTGCAGGGGCCCATCTGTAAAGTCAGGAGTGTGGTGATGGTAGTGTTTGGAGAGGAGAAATCCAGAGATGACCAACTGAAGCACTGGAAATACTGGCACTCGAGGCAGCACACGGCCAAGCAGAGATGCATTGATATCGCGGACTACAAAGAAAGTTTCAACACCATCAGTAATATTGAGGAGATTTCATACAATGCCATTTCATTCACATGGGACATCAGCGAGGAAGCAAAGATCTTCATCTCGGTGAACTGCCTGAGCACAGACTTCTCGTCTCAGAAAGGAGTGAAAGGCCTGCCGCTGAACATACAGATCGACACCTACAGCTACAACAACCGCAGTAACAAGCCCATCCACCGCGCTTACTGCCAGATTAAAGTCTTCTGCGACAAGGGTGCCGAGCGCAAGATTCGTGACGAGGAGAGGAAACAGTCCCGGAGGAAGGGCAAGTGTCCTGACGTCAACCCTCCTTTGGGAAACTGTAAGCACAAGCTTTAGGCTTTTGCTTTTAACTGATGCAATGGTGGTTTGTAGTAGAAATAGAAGCCTAGAGCCCCGGAGAGTCTTGTTTTTCACTTTGTCCTTGTTCGTTTTGTGCAGTCGGGGCAGATGTCAAGGTGCCGCTCCTGCACAAGCGCACAGACATGACAGTGTTCAGGACACTGACGGATTTCGAGACGCAGCCTGTCCTTTTCATCCCAGACATCCACTTCTCTACCTTCCAGCGACATGTGAGTGCCAGTCCTCAAGTTATTTTTGTGCGCACAAatttatcaaatataaatattagacGATCATTgtgagggatagttcacccaaaaaggaaaattctgtcattatttagtctccctttaattgtttaaaacctgtttgactttctttcatctgttgaatgcaaaagaagatgttttgtaGAAAGCtaaaagcctgtaaccattgacttccattgtatttgttttttcctactatggaagtaggtggtaacaggttttcagcattcttcaaattatcttattttgtgttcaacagaagaaagaaactcaaaggtttgaaatcACATGAgagtaagtaaatagtgagtcatTTTCTTATTTTTGGGTGAGTTACGCTAAACAATTAATTGTTGTTTAACCTCTCGGCAACAATATATGGACAATAAAGTGTGTACTAGttttattcagcaaaaaaagaagaaaaaaaa
>TCONS_00024082
GCTTGCCGTGAGGAGTCAGACTGTCAGCGAGAGCTGATTCCGCTACACAGTTGTGCTGTTCGGTTTCTTCAGTTCACCTGTCATGTTCAGACCTGCTACGGTCGCAGGTGTATCTGCACCTGCTGCGGGAGTTATGAGCGCTGCGCTGAGTTTGTCAGACTTGCGTGATACTTGATTTGTTTTGAatgtttgtttatctgttttgGAGTGAAATCCTATTTGAGGCAAAATGGGAATTGCAGGACTTTCTTTTATAAGCGGGCAGTGCTCGTGCTGCCCAATGATCCTGCGTACAACCAGCG

Function

symbol description
grhl1 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including desmosome organization; epiboly; and inner ear development. Located in cytoplasm. Is expressed in several structures, including epidermal cell; head; integument; pronephric duct; and sensory system. Orthologous to human GRHL1 (grainyhead like transcription factor 1).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0048839 inner ear development biological_process
GO:0008544 epidermis development biological_process
GO:0002934 desmosome organization biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0090504 epiboly biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3665 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including desmosome organization; epiboly; and inner ear development. Located in cytoplasm. Is expressed in several structures, including epidermal cell; head; integument; pronephric duct; and sensory system. Orthologous to human GRHL1 (grainyhead like transcription factor 1).

Ensembl:

ensembl_id ENSDARG00000061391

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024076 False 611 processed_transcript 0.43 6 32391056 32401688
TCONS_00024079 False 735 lncRNA 0.47 6 32391056 32408399
TCONS_00024077 False 2069 mRNA 0.51 15 32391095 32426392
TCONS_00024078 False 2054 mRNA 0.51 15 32391095 32426413
TCONS_00024080 False 586 mRNA 0.52 6 32396388 32413147
TCONS_00024081 False 2171 mRNA 0.47 9 32407721 32426392
TCONS_00024082 True 302 processed_transcript 0.49 2 32423434 32426104

Neighbor

gene id symbol gene type direction distance location
XLOC_012220 klf11b coding downstream 21009 32365941 ~ 32370047 (-)
XLOC_012219 CR407546.1 coding downstream 144801 32246129 ~ 32246255 (-)
XLOC_012218 NA coding downstream 254928 32127897 ~ 32136128 (-)
XLOC_012217 abraxas2 coding downstream 571219 31805775 ~ 31819837 (-)
XLOC_012216 dtd2 coding downstream 671985 31717192 ~ 31719071 (-)
XLOC_012222 xkr5b coding upstream 181597 32608010 ~ 32621103 (-)
XLOC_012223 cgref1 coding upstream 204376 32630789 ~ 32636533 (-)
XLOC_012224 kcnk2a coding upstream 230789 32657202 ~ 32698517 (-)
XLOC_012225 cenpf coding upstream 294000 32720413 ~ 32743249 (-)
XLOC_012226 smyd2a coding upstream 319350 32745763 ~ 32779556 (-)
XLOC_012208 BX539317.1 non-coding downstream 1006508 31384434 ~ 31384548 (-)
XLOC_012203 BX571712.2 non-coding downstream 1205813 31181950 ~ 31185243 (-)
XLOC_012201 BX571712.1 non-coding downstream 1293515 31096326 ~ 31097541 (-)
XLOC_012228 NA non-coding upstream 707406 33133819 ~ 33138376 (-)
XLOC_012229 NA non-coding upstream 719181 33145594 ~ 33162478 (-)
XLOC_012230 AL590149.1 non-coding upstream 780367 33206780 ~ 33231714 (-)
XLOC_012233 CR628327.1 non-coding upstream 991849 33418262 ~ 33460893 (-)
XLOC_012235 NA non-coding upstream 1138469 33564882 ~ 33571806 (-)

Expression


Co-expression Network