G394493


Basic Information

Item Value
gene id G394493
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000222
NCBI id null
chromosome length 845821
location 480250 ~ 644995 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU451899
ATATAAATTGGCACTTTTCATATATTAAAAATATGACGATATATTTACACTGTAAAATGTAATTAGTTGAGTGTACTTAGAAAACACGAGGAAAACAATTGCCTTAATTTTCTCAAGGATGGGGTCTCTGGGGTCAGCAAACTCGCCGGCACGCTTTGGTGGATTTTTTTCACATAGCAGCAAAATCGACTTGAAATACTCTGTCATGATTTGTCATACAGAAACGAGTAATACATAATTAAAAGAACTGTTAAGTGTCTACTTTTACTTGTGTACACTCACAATAACAACAAAACTGCTTTTGAAAAAAATAAAGAAAACAAACATGGTGCACTTTCTGCTTTGTCAGTCTCTGTGAACTTCTCTCTGAAACGCGTCAGAAAAATGAACCAAAACTCAGCGAATACTTGCCACACAGACATGAGAGATATGTCTCTAGAAAGCTTAAAGTGTCTACTTTTAAATTAAGGAATTTATATCAAAAAGAAGTATTCACTGTTTATGTAATCCGTATGAAACCTCTAGTGCAATCTTTAGCATTATTTTTTAATGTGGCCACACCCAAGCACAGCGCAAGCTATTCACATGGCAATCATCCACATGAGCCACGCAAACCTGTAAACGCCTTGACAAAACAAAGCATCAAGCTTCATCAGATTCCTTTGCTTTTCATCGAGTTTGGAAGAATATGCTCTGTGAGGAATAAGCCTTGAATTTACCTCAGAAGAAGAACATTGATGCCTTGTATGATCCAACGGAGGATTTCATCAGTAGGTCATTTATTCTCACTTACATTAGTTAACGTGTTATTGTTACATAAACTTTTAGACATTTTACTAGATGAACTATTGCCAGACTAAAATGTGTGAAATCGACCAAAAAAACATGTTGAAATATGAAATAAGTTAAATCTCTCATTTTAAATGTGGTACTACACAAGACTGTTTTATGCTCTATAATATAAAACAGTATGATATAAAAGTAATATGAGTATTTACACTGTAACATAATTAATATTATAATGTTTAGACCAGTGTTTACTGGGAAACACCGTGTTCGTGAATATCTGTTCAAACACAGATGTTTATAATGTGCTAAACAATAATGTTTCATAGAGTAAATGGTCTCTGTAAGTACTGTGAGTTTGTGGCTTCTTATCACAGAATGAGGCAGACAGTATGTTATTTTGAAGTATTCTGTATATAATTAATGGTGTTGATTAGCATTGTATTATAAATATACTTTATTCTTATGAAAATACCAGAGATGTATTGATCCAAACTCCCAATAGCTTCCTGTTTTGAGTATTTTCTCCATTCATCTGGGATCGTCCTCTTCTCAAATGTTTTATTGTAGTGTTTTTCCAGATCTTTCTGGAAGTTGCACACAAACCACTTCCAGTAGGGCAGTTCAGAAAGGTCAGGGGTGATACTCCAGTCTGCATAAACTCCTCCTGCTCTTCTGTATTCTGTGCAGAGGAGTAAATCGTCTGAGGCATTGGGATAAAAATAAAGATTTCTGTTTGCTACCATTGATGTGCAGATTTCAACAGACAGGGTTCTTGTTCCTCTGTAAAATATTCCTTCAATTCCAGTCACTCTGTGGAAAGGAACACTGTGATCTCCATCATGGTTTTCTACAGTATTGGTGCAGGTGGCTCTACAGAACGGACACTGAACCCAACAGCACTGACACAAATGATCAATCAGAAGCTCATCTGGCCTGAACGTATAGTCCAGATTTATTGGAAAAGTCTTAAATTTACTGCTGATGTCAAAAATTGTTGCAGTAAGTTCTTGTCTTATCACATCTTCTAGGAGATTCACATCAACATCATCATGTTTCACTCCACTGAGGTCTTTTTCAGAGAAGATCAGCACATCTGAGAGCTGCTGTGTGAAACTCTTCAACCACAAACCAACATCTCCTCTGTTCACTTGAACATGTTCAGTAGATTCATGTGCTGCTTTCATGATCTTCTGCTGCAGGAGTTCAATGTTCTCCTTCATCTTGGGTAAAACACTGACACTGAACTTATCAGTGATGTACTGACTGACTTCATCTCTGATGAAGCTCTTGAAGTGATCTCTGGGATTATGAATGTAG
>TU451898
TATATATATATTTAAACAAAATAATAAAAATTTGGACATCTTTATCCTGTTCAAAAGTTTTCACCCCCCGACTCTTAATGCATCGTGTTTCCTTCTGGAGCATCAGTGAATGTTTGAACCTTTTTTTTAATAGTTTTGTTTGAGTCCCTCAGTTGTCGTCAGTGTGAAAAGATGGATCTTAAAATCATAGTCACTGCTGGAAAGGGTTCAAATATGCGAAAGATGCTGGAAATCTGAAGTATTTTCAGGACCTGGAGGATTTTTTCTGAATAATATTGGCCAGTTTAACTGCTCAGGACAAACAAGGGACTTATGAACAACCATCACAAAACAAAAAAACAGTCGTAGATCATCCAGGTAACCACACACAGTATTAAGAATCAAGGGTTCACAAATCTTTGAGCGGGTTGTTTTCATAAATTCAGCTATTTTTTGTCTTGTGTACCATATGTAAACATTTTTATGTAAAATATCTTACTCAGGGCAGTACTAAATAAAAAATAACAAGCATATTGTATGATCCCTCTTATTTTGTTAAAATTATTCACATTTTCACAGATTCTATGAGGGGTACACAAACTTTCAAGCAGCACTGTATAATGCAGAATTTTAAAACTAGCTGACAGTTCTTTCACTGCAGAGAAAAGCTGGACTTGTTACTCCTAACTAAACCTATCCTACTGGCACTATAAGACCATGACTTTGAGAGTGATTTTTGACAAAGGTGGCAGATACCATGACAATAATCATATAATAAGCACAATAATAAGCACACATAGGTCTATGGTTAGGACAAGGAAACCTGTAGAAACGTCAAGGCAGTTTTCAGTGCTATATGGTGTTTTTTCTCATCATGTTGTAATTTTTTGTTAACAGTACAATAGTACTAAAAGTACAATTATTGGACATTCATTTTTTATTTTAGGTTTGATTTCATCAGCTATGAAAATCCATACAGAAATGTAACATTTAAATTCGTGAAAAAATATGTAACAATGACAATTGTTTTTTTTTTTTTGTGGGGCTACAATACAACTTATAATCAGCACTTAAAAAACTTATTATCAGCACTTAAAAAACTTATTATCAGCAAAAAAAAAAAAAAAAAAAAAAAACATTAAAAAATAAAAACTTATCAGCAACTGTTTACATTTGTATTGGATTTAAATTTTAAGGTTGTTTAATATGCAGGATTATCAAAGTTACTTACTGATTAAAAATAATAAAAGAAATAGAATTCAACAGATCAAACCCTCTAAAGTAAATGCATACAAAAATTGCCAGATAGTGAAATATCAAGAAACGTTCCTGTTAATAATAATAATGAAAAAAAAAAACACTTAATGTGCACACATGCACTAAACACACAGTATAATTTCTGTTATACTTGAATACCGAACTCTAAATGTAAATAATTTTCAATGATTATCTCAATTAGTTCATTACGAAAATAATATTTTAGTTTTCATGATTATAAACTTATTACTGCAATGAAGATTTGTAGTGAAACTTTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCTTTATTGTCTTATAAGTAGAGATCAGTTCACAGATTCAATTATATGTATTTATCCAAACTCTCAAGTGCTTCCTGTTTTGAGTATTTTCTCCATTCATCTGGGATCTTACCACTACCATCAAATGTTTTATTGTAGTATTTTTCCAGATCTTTCTGGAATTTGTATACAAACCACTTCCAGTAGGGCAGTTCAGAGAGATCAGGGGTGATGCTCCAGTCTGCATAAACTCCTCCTCCTTGTCTGTATTCTCTCCAGAGCACTGTATCATCTGAGGCATTGGGATAAAAAGATTCAGTGCTGCTTGATACTGATGATGTGCAGATGCTAATACACAAGTTTGTTGTCTCCCGAAAAGACCACCCAGAAACTCCAGTCACTCTGTGGAAAGGAACACTGTGATCTCCATCATGGCTTTCTATGGTGTTTGTGCAGATGGCATAACAGAACGGACACTGAACCCAACAGCACTGACAGAAGTGATCAGTCAGAAGCTCATCTGGCCTTTCTTTATAGTCCAGCTTTACTGGAAAAGTCTTTGTATTGAATCTCCTGCTGATGTCAGACATTATAGTAGGAAGTTCTTGTCTTATCACATTTTCTAGGAGGTTTAAATCATCAACATCATCATGTTTCACTCCACTGAGGTCTTTTTCAGAGAAGATCAGCACATCTGAGAGCTGCTGTGTGAAACTCTTCAACCACAAACCAACATCTCCTCTGTTCACTTGAACATGTTCAGTAGATTCATGTGCTGCTTTCATGATCTTCTGCTGCAGGAGTTCAATGTTCTCCTTCATCTTGGGTAAAACACTGACACTGAACTTATCAGTGATGTACTGACTGACTTCATCTCTGATGAAGCTCTTGAAGTGATCTCTGGGATTATGAATGTAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU451899 False 2106 lncRNA 0.36 2 480250 644995
TU451898 True 2443 lncRNA 0.33 2 642525 644995

Neighbor

gene id symbol gene type direction distance location
CI01000222_00328639_00330158 NA coding upstream 149876 328639 ~ 330374 (+)
CI01000222_00315211_00317790 NA coding upstream 162164 315211 ~ 318086 (+)
CI01000222_00255680_00256841 NA coding upstream 223404 255612 ~ 256846 (+)
CI01000222_00232414_00239331 NA coding upstream 240840 232198 ~ 239410 (+)
CI01000222_00214433_00217905 NA coding upstream 262331 214433 ~ 217919 (+)
CI01000222_00695056_00696916 NA coding downstream 50061 695056 ~ 697046 (+)
CI01000222_00772007_00787456 UBN2B coding downstream 126867 771862 ~ 787590 (+)
G394478 NA non-coding upstream 20774 458218 ~ 459476 (+)
G394477 NA non-coding upstream 22203 457834 ~ 458047 (+)
G394459 NA non-coding upstream 28453 415838 ~ 451797 (+)
G394460 NA non-coding upstream 53042 426430 ~ 427208 (+)
G394357 NA non-coding upstream 97309 376128 ~ 382941 (+)
G394521 NA non-coding downstream 54789 699784 ~ 707290 (+)
G394544 NA non-coding downstream 70541 715536 ~ 715762 (+)
G394561 NA non-coding downstream 113010 758005 ~ 760127 (+)
G394482 NA other upstream 17784 461989 ~ 462466 (+)
G394294 NA other upstream 331340 132044 ~ 148910 (+)
G394293 NA other upstream 368127 109188 ~ 112123 (+)
G394303 NA other upstream 437403 31433 ~ 42847 (+)
G394559 NA other downstream 105352 750347 ~ 752670 (+)

Expression


Co-expression Network