Gene
RNA
| Item | Value |
|---|---|
| gene id | G394521 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000222 |
| NCBI id | null |
| chromosome length | 845821 |
| location | 699784 ~ 707290 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU451933 | True | 286 | lncRNA | 0.35 | 2 | 699784 | 707290 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000222_00695056_00696916 | NA | coding | upstream | 2738 | 695056 ~ 697046 (+) |
| CI01000222_00631228_00636853 | NA | coding | upstream | 62931 | 631228 ~ 636853 (+) |
| CI01000222_00584243_00585193 | NA | coding | upstream | 114566 | 584001 ~ 585218 (+) |
| CI01000222_00531504_00560379 | NA | coding | upstream | 139070 | 531155 ~ 560714 (+) |
| CI01000222_00328639_00330158 | NA | coding | upstream | 369410 | 328639 ~ 330374 (+) |
| CI01000222_00772007_00787456 | UBN2B | coding | downstream | 64572 | 771862 ~ 787590 (+) |
| G394493 | NA | non-coding | upstream | 54789 | 480250 ~ 644995 (+) |
| G394485 | NA | non-coding | upstream | 107931 | 591270 ~ 591853 (+) |
| G394486 | NA | non-coding | upstream | 115813 | 573474 ~ 583971 (+) |
| G394492 | NA | non-coding | upstream | 213565 | 478461 ~ 486219 (+) |
| G394478 | NA | non-coding | upstream | 240308 | 458218 ~ 459476 (+) |
| G394544 | NA | non-coding | downstream | 8246 | 715536 ~ 715762 (+) |
| G394561 | NA | non-coding | downstream | 50715 | 758005 ~ 760127 (+) |
| G394482 | NA | other | upstream | 237318 | 461989 ~ 462466 (+) |
| G394294 | NA | other | upstream | 550874 | 132044 ~ 148910 (+) |
| G394293 | NA | other | upstream | 587661 | 109188 ~ 112123 (+) |
| G394303 | NA | other | upstream | 656937 | 31433 ~ 42847 (+) |
| G394559 | NA | other | downstream | 43057 | 750347 ~ 752670 (+) |
