G394559


Basic Information

Item Value
gene id G394559
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000222
NCBI id null
chromosome length 845821
location 750347 ~ 752670 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU451975
CGGGTGTCTAATGGTTTTCTATGAGTGGAAAGGGAGGCATGACTCCTGCTGTAACTTTACCAGTGGTGGACAGTAATGAAGTAAATGTAATTCGTTACAGTACTAGCTTTTTCGAGTATCTGTACTTTATTTAAGTATTTCCATTTGGGGATACTTTTTACTTTAACTTTACTACATTTCAAAGTCAAATATCTTACTTTTTACTCAGCTACATTTTGCGAAATCAGTCGTTCCTTTTTATTTATGAGTGGATAAAAAAACTGAACAGGTCAAGCACGCGGCAGGCAAGCCACCAATCAGGGTACAGCGCGCGCTCTGTTTTGAACTTGGTTTGGTTACTGCTTACTTCACTGCGTCAGTGCAACGGCATAACATTTTGAGAGTGTCTTCACTCTTAATAAATGATGGAAGAATCAGGAACTCCTGACTCTAAAGTGCCAGTGCCACAACAGCCGTGGCCTTATTTGCGGGATTTTTTTGAAGTCCTTGAAAAGAAGAAAGAGTCCTTAATTTTCAACTGCCTTATTTGCCTGCCTCGGAACTCAAACATTTCTTCTTACTGGAATTCTCCTTCCAATCTTAAGAAACACGTTGAAGAAAGCATGGTAGCCACTTCCAACAATATACTGCCCTAACAGCGCCAAGGAAAAGAAAAATGGTGAGTGAGGAGGCTCCTTCAACCTCTAGACAGCTGAAGCTGTGAGAAACTAAGCTAGTCACACAGAAGACTGTGGATCAAGCAGTGTTGAATTTTGTCTGCAATCCTTGTCCCGAAATTTAAAACATCCTGGACGTCGGATGAACACATTGTCAAACTGGGCCTGGACTACATCAAGAACCATATGGAGGAACAGACTTCGAATCAACCACCAGCTGATGGTTCCAGTGCCTCTGAGGAAGAGGACTTCTTTGCAAGCATGAAGCCTACTCATGGTCAGGAAGGTATCAAGCAATTAGATGGCTACCTGGCATGCAAAGCTGATGACAAAGAAATTCTCAAGTCCTTCCCAGCAGTCTGTAAGTTGTCTTTGAAAGTCAACACTGCTTTACCCACTTCTGTAGCTTGTGAACGTCTTTTCAGCACAGCAGAGCTTATTTTCAGTCCTAGGAGGGCAAGAATGGACTCAAAAAACTTTGAGAATCAGCTCCTTCTCAAGCTGAATAAAAAATATTGTCACTTTAGTTAGATCATCAGTGCCATACTGTACTAACACGCTCACCAGAAATGTCATTTGACATGTTGTGTAATTTGTTTTGATATTTCCACACATACACACACAATATATACATTTACCAAGTATCACCAGGTTTCATGTGAAGCAGTATAAGAATGCACAAACACTGACAATCATACATGAAAGCATTACAAAACTGATTAATCCAAGTTTTTATAAAACTAAAAACTGTTACAATAAACCTTAAATTGAATCTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU451975 True 1432 TUCP 0.40 3 750347 752670

Neighbor

gene id symbol gene type direction distance location
CI01000222_00695056_00696916 NA coding upstream 53301 695056 ~ 697046 (+)
CI01000222_00631228_00636853 NA coding upstream 113494 631228 ~ 636853 (+)
CI01000222_00584243_00585193 NA coding upstream 165129 584001 ~ 585218 (+)
CI01000222_00531504_00560379 NA coding upstream 189633 531155 ~ 560714 (+)
CI01000222_00328639_00330158 NA coding upstream 419973 328639 ~ 330374 (+)
CI01000222_00772007_00787456 UBN2B coding downstream 19192 771862 ~ 787590 (+)
G394544 NA non-coding upstream 34585 715536 ~ 715762 (+)
G394521 NA non-coding upstream 43057 699784 ~ 707290 (+)
G394519 NA non-coding upstream 44291 604240 ~ 706056 (+)
G394493 NA non-coding upstream 105352 480250 ~ 644995 (+)
G394485 NA non-coding upstream 158494 591270 ~ 591853 (+)
G394561 NA non-coding downstream 5335 758005 ~ 760127 (+)
G394482 NA other upstream 287881 461989 ~ 462466 (+)
G394294 NA other upstream 601437 132044 ~ 148910 (+)
G394293 NA other upstream 638224 109188 ~ 112123 (+)
G394303 NA other upstream 707500 31433 ~ 42847 (+)

Expression


Co-expression Network