XLOC_012230 (AL590149.1)


Basic Information

Item Value
gene id XLOC_012230
gene name AL590149.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 33206780 ~ 33231714 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024098
GTAACTACCTGTGCGTTTCAACCAAAAtaagaatcaagaatttcaacagaccacggaataaataaagttatttgtGTTTAAAGGTGTATTGAAAGTACAGCTAGCATTTTCTATTCTCTTAGTTTTTTTTAGGTACATGTTATGAAATATTCACATCTCACATGGTGAAAGTGTGATAGACCAGAACGTATCAATGTCATAAAAGAGTCATTTAACTTCTGAAATTCCCAACTCTGACTTTAGAACTTTATCAATTCTGAGGGACAGTGTTCTAtgaacaagtttggacacccctgttgtaaTCGCTGTATTAACACTTGCATATAATGTCATTCACAAACAAAAGAAGTACAATTAAGTGAATGTCGTGTCTGCACAGCTTTCAAGTATACTCAATGTGAAAGAGCACAGATGGACACATGCACAGTACTACCTAGTGGACTCAACATTGACCATGGATGCAAAAATCAGTGTGCACACTGATGGACACTAAATTACGTTATGCAGACAATATGCAGACATTGTGAAACAGGTCGTCCAAAGTATACTTTTCTCTTAAGGGGTTTCATTTGCATACTAGAGTCTGTAGGCTTTAGGAACTTTTTTTATGTGCCTCTAATGCAGAATGTTTCAGATCCCACATGGTGAGGGATGAGTAGGAATGGGGGGGTTCAAGGATGCTGTGACATACATGACAGTGAAGTTTAGGTATAAAAAGGGCCAGCAAGTAAGGTTTGTGCAAGTAAACTTCACTTTTTCTTTCTTGAACCACACAGTTAGATGACTCAATtcacattttgcagtaaaaaggTAGTTCTAAATATGGCTGCACATTTATAGACTCTTATTTTTGGGGTCTAATGGAAACAAACTATTTTGCCatgaaatgtgtgttttatttgttccTTGTAaagttttctttctttattctttcattttacaaaataaaatgtaaatactttcaGCTTTATGCCCAGATTTTAGTTCTCCCAGAGTTAATCGCAGCACTTTAAAGCTCACTGTGTCATCGTGTTGTATGAATATACTTAATGTTGTGCGATTCATCTTGACTTGTTCTTGTCTAGAATTTGAAAGTGTTTGTCATGTCATTCTGTTCTGGTTTAAAAGTCTTTTGCGTATTTTTCCCCCTCAAGTCgtgatactttttatttatttttggtgatgCCTTTTATGTTATTTACAAGCATAAAAATCAACAAGTGGGTTTTATCTTCTGTCAAATATGGCTACGATGTTCAACAGGTGGAATATTCTAGGCTGCTTACATGTGAGGTGATTTTTGCATGTATGAAATCAAATATCAAAGTTTTGTCTTTCCTGATCAGCCGCTGCATGCACTGAGTGTTTTGTCTGtgcttttaccattttttaaatgtatttatttatttatttttaataagtgaGATCATCACAACACTGTGGATCGTAAATAGTCTATTGTGTGTTTAGATATGGACACCGCAAACCAATATGACTTCAGAACTGTGTTCTGTGAATGTTTGCCTACATGAAATCATAAAGTGATGTACATATGTGATGTGAATATCAATTAAAGACTAATTTTATGAATTCAAACTAAAGTCTGGCCTGTGTTTAAAGCTTTATTGGCAACCGCTAAGTGATTTTGAGCTGTTGGTTGTTCAGAAATGAACCATTGTGTTCTCTTCTGCTTGAAACATCATTTTAtgtcacattttcaaaatgtacagtataatacatgttcaataaatattctaaaaatgctgttttagCCTCTAAGCTGGTATTTAATCACCACAGCATTTCTATATACAGAATTCAGAATTTATTGTTGAATACAGTGTGAATAAACTCATCAAGATTTAAGTGCTATTGTTAACATTGCCCACCTTCGTTTCTATGCATGATAAGAACCTCTCATCCAGAAGTTTGCTGGGAAGAAAGTATATTCAAAACATCCCCCTATAACAACCTCTCCCCCTTAAAGCCACTCACTCATCCTTCCTCGGTTGGTCTTTATGCATTACGTTTTTGAAGAGTGTGAGCAGTGGTTTCTGAGCACGCTCGTCCCAGGACTTCATGAAGCCTCCATAGCGCTTGCTAGCCGGCGGGACGCTCCAGCGGAAATGGGTCATTTTGTAGGGGGGGTCCTTCTTCCCCAGTGGGTTTAAAGGCATCTCTTCTTGCGGATAGTCGACCTCGTTATTTGCCAGCTCGCGTCTCATCTCTGCCGGAAGCGTTTCGGCGGATTCCTCTTCCACGCCGTTCGTGTACACCTTGATGGGTCTGCGTTTGCGGCCGACCGGTTTGCCCCACCGGAAGTGCTCCATGGAGTAGGAGCGCTTGTGGTCGTGTCGAGGGCCGGACTCCGGCTCTATCTGTTCAGGGGCTGCGAGTGCTACAGGGGAAAGGTGTGCGAGGAGGTCGATTTGCTCCGGCTCGGAGGGAGGCTGTAGATGGCTTTCTCCAGGGTAGACGGGGGTTTCATCTTGAATGCGCGAGAGAAAAGAAGAAATACTTTCCACATTCCCAGTGACAAGAAGATCTGCCAGCTTGGTAAAAGAACATAGGGTGGCAATCTGTTGAGGATTTCCAGAAAATGCCAGGCCAATCAGGATTCTCCATTTCAATGACATCCCATCTGCTCTGGACAGACCCAGTGACTTCATTAAACCATAAGGAAATAAGCTTTACCAGTTTGAAGACCCAAATAGGTTTGAAGGTCTGACaaagttttactttttttcccgGAAAACCTCCGTCTAATGCAGAATGAAGTTGTCTCTACTGTACACTTTGTTATTCTGGGCCCAAAACTCCGTGGTTAAATCCAAAGATGTTGCTGATGAGTCTAAAACCACAGACTCTGACAAAACTTCTCAGACCGACACACATAAAGTGAGCAGTGCCTTAATGCAGTGTGGTGAATACAGCAATGAAGTGATGCCAAATGGACAGTGTCGTTTAATAGCCACATTACCGCAGATGGAGGAGCAGAGGTGTCCTGATATGTTTCGCTGTACGGATGAGGTCTCGTACTGGCTGCGCGAGAATGAGGAGCGAAAACAGCAGATGCAGGACCTGAAGGAGACCATCTCTGAGCTTCAAGAGGAGCTAAGAAACCACAGGCATCGCATCAAAGTTCTGGAGCTGCAGAGGGAGGAGAAGTTTGGAGTAAACTCGTCTTTAGAGAATCGTTTCCACACTTTGCACCAGATCTACGAAGAGGCCAACGCACTGCTGGACATCCACGGTTCACTCATCTACGACCTGCAAACACAAATCCGCAACCTCACTATGATAGTAGAGCGCGTGAGACGCAATCCTGGCTGTATGATCAATATCATCCGCACAAGCCCTCTCCTCAGCTCCCAAGATACCCTTCATCCAGAGGTTCAGCACATACGAAACTGCCCGATTGACTGTGCATCCCTGTATTACAATGGAGTTCACAGATCTGGGATTTTTACTGTTGTCCCCTCATTGGGATCGACTCCGGTAGAAGTTTATTGTGATATGGAAACACAAGGAGGTGGATGGACAGTGTTTCAACGTCGGCAGGACGGAAAGGTTAATTTCAACCGTAAATGGACAGAATACAGGGATGGTTTTGGAGATCTGCATGCAGAATTCTGGCTGGGAAATGACCACATCCATGACATCTCCAGCCAGGGAGAGTATTCGCTTCGCATTGACCTTGAGGACTGGAATTCCAAGCACAAACACGCACTCTACCAGAACTTCTGGATTGAGAATGAAGACAACCACTACCGTCTCCATGTCTCAGGATTCAGCGGTACGGTTGAGGACTCGTTTGGCTGGTATCACGACAAGCAAAGCTTCAGCACTCCAGACACAGGAGACATCTGTGCCGAGATCTCTCACGGGGGCTGGTGGTACCATCAGTGCTTCTTTGCCAACCTCAACGGAGTCTATTACAAGGGGGGGCGTTACTCTGCCAAAGGGAAGAACCTGCTGGGGCCTGATGGGATTGTATGGTACTCTTGGAAGGACTCGGATTACTATTCGCTGAAGAAAGTGAGCATGATGATCCGGCCGCGCACATACAGGCCTCGTCTCTCTCCATAGCACCTGTGGAAGACCACACTGCAGAGACACCAGTAGGACCTGTTCATTCTCAATTACATCAACTATGGTTAAAGGGAAAGTCTCAACTGGTGTCTGACAAACTGAAGAATTCGGTGTATTGAATTGTATGTAATACATACACATATGAAACGCATAAAAACAGTGTAAACATGCagtacattaaaaacaaacaatgaaaaacatctctataactttaatttttattcattcaattccATAATTGTATTTAAGTACTGTTGTTATTGAACTATGAGCTGATGACAGGATTTTAAGCTAAATATAAATGCTGAAAGTCTTGCTCATTGTTATTAATTAAGCTAATGTGAAAAAATCAACTTCAAAAGGATATTCC
>TCONS_00024541
catgattacattttttttttgagtgagatgctaatggtctaatccaattctatgatttatgctaagctaagctaaaagtgctcctgccagacatgGAAATcatctgaatggatttaaaaatagtaaaacatgcaaaattaacctatttccaaaaaagtagGGTGCTTCTTTAGGGTCATTGGCAACTCAGAACTCAGTACTAAGATATCTGGTTATTTGTAACAATAgcttgatttaatttaatatttatttcctcAGAGGTTCAGCACATACGAAACTGCCCGATTGACTGTGCATCCCTGTATTACAATGGAGTTCACAGATCTGGGATTTTTACTGTTGTCCCCTCATTGGGATCGACTCCGGTAGAAGTTTATTGTGATATGGAAACACAAGGAGGTGGATGGACAGTGTTTCAACGTCGGCAGGACGGAAAGGTTAATTTCAACCGTAAATGGACAGAATACAGGGATGGTTTTGGAGATCTGCATGCAGAATTCTGGCTGGGAAATGACCACATCCATGACATCTCCAGCCAGGGAGAGTATTCGCTTCGCATTGACCTTGAGGACTGGAATTCCAAGCACAAACACGCACTCTACCAGAACTTCTGGATTGAGAATGAAGACAACCACTACCGTCTCCATGTCTCAGGATTCAGCGGTACGGTTGAGGACTCGTTTGGCTGGTATCACGACAAGCAAAGCTTCAGCACTCCAGACACAGGAGACATCTGTGCCGAGATCTCTCACGGGGGCTGGTGGTACCATCAGTGCTTCTTTGCCAACCTCAACGGAGTCTATTACAAGGGGGGGCGTTACTCTGCCAAAGGGAAGAACCTGCTGGGGCCTGATGGGATTGTATGGTACTCTTGGAAGGACTCGGATTACTATTCGCTGAAGAAAGTGAGCATGATGATCCGGCCGCGCACATACAGGCCTCGTCTCTCTCCATAGCACCTGTGGAAGACCACACTGCAGAGACACCAGTAGGACCTGTTCATTCTCAATTACATCAACTATGGTTAAAGGGAAAGTCTCAACTGGTGTCTGACAAACTGAAGAATTCGGTGTATTGAATTGTATGTAATACATACACATATGAAACGCATAAAAACAGTGTAAACATGCagtacattaaaaacaaacaatgaaa

Function

GO:

id name namespace
GO:0099643 signal release from synapse biological_process
GO:0042982 amyloid precursor protein metabolic process biological_process
GO:0042983 amyloid precursor protein biosynthetic process biological_process
GO:0042984 regulation of amyloid precursor protein biosynthetic process biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:1903018 regulation of glycoprotein metabolic process biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0010559 regulation of glycoprotein biosynthetic process biological_process
GO:0030141 secretory granule cellular_component
GO:0045202 synapse cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0015665 alcohol transmembrane transporter activity molecular_function
GO:0008017 microtubule binding molecular_function
GO:0034632 retinol transmembrane transporter activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000012581

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024098 False 4462 lncRNA 0.42 8 33206780 33231714
TCONS_00024541 True 1155 lncRNA 0.43 4 33206954 33209500

Neighbor

gene id symbol gene type direction distance location
XLOC_012229 NA coding downstream 44302 33145594 ~ 33162478 (-)
XLOC_012228 NA coding downstream 68404 33133819 ~ 33138376 (-)
XLOC_012227 prox1a coding downstream 340992 32822588 ~ 32865788 (-)
XLOC_012226 smyd2a coding downstream 427224 32745763 ~ 32779556 (-)
XLOC_012225 cenpf coding downstream 463531 32720413 ~ 32743249 (-)
XLOC_012231 efr3ba coding upstream 1034 33232748 ~ 33289349 (-)
XLOC_012232 ccdc28a coding upstream 157185 33388899 ~ 33416020 (-)
XLOC_012233 CR628327.1 coding upstream 186548 33418262 ~ 33460893 (-)
XLOC_012234 tmem121aa coding upstream 270052 33501766 ~ 33552363 (-)
XLOC_012235 NA coding upstream 333168 33564882 ~ 33571806 (-)
XLOC_012219 CR407546.1 non-coding downstream 960525 32246129 ~ 32246255 (-)
XLOC_012218 NA non-coding downstream 1070652 32127897 ~ 32136128 (-)
XLOC_012208 BX539317.1 non-coding downstream 1822232 31384434 ~ 31384548 (-)
XLOC_012237 NA non-coding upstream 1429684 34661398 ~ 34691556 (-)
XLOC_012238 NA non-coding upstream 1475065 34706779 ~ 34805758 (-)
XLOC_012245 BX255944.2 non-coding upstream 2322857 35554571 ~ 35846256 (-)

Expression


Co-expression Network