CI01000225_00425270_00431446 (PXYLP1)


Basic Information

Item Value
gene id CI01000225_00425270_00431446
gene name PXYLP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000225
NCBI id null
chromosome length 750214
location 424599 ~ 431446 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000225_00425270_00431446.mRNA
ATGTCCGTCGCTGTGCGTATAAACCAGCTAACCGTTATACTTCTGTCTGTGCATCTCATTCCAACCAATCCGGTGGCAGAGCAAAGGTCACTTGGTAAAAGCAGAAAGCGTGTGAATCCAGTCCTCCATACGGATCCTCCCACCCCAGACCCCATCAGAGACACCCACCAGTACTGCAATTACCCCAACCTCACTGAGCATGGCTGGGAGGGTCACAGTCCGGCTGACTACAGGCTGCTGTCGGTCCAGGTAATGATTCGGCATGGAGACCGTTTCCCTTTGTACTCCATCCCCAAAACCAAGAAACCCGCCATTGATTGCACCCTATCAGTAAAGAGAAAGCCCACTCATCCCCTTTTGGCCTCCTTCATTAGTCACATGGCTCTCGGTGGGCGTGGTCACTGGGACGCATCACTGGGATCTCTGCCCCGATTACCCAATCACAGCACCTGTGAAATAGGAGAGCTTACACAGACAGGAGTCGTACAGCACTTGAAAAACGGTGATCATCTTCACCAGGCCTACATCAAGCGTCACAATCTGATTACTGCTGATTGGTCACCGCGGAAGTTGTGGGTGGAGACTACAGGTAAAAGCCGCACCTTACAGAGTGGATTGGCCTTCCTCTTTGGCTTCCTGCCACATTTCGATTGGTCGCGGCTGACGGTTCGACAGCAGTGGAGTACGCTGTTCTGTGGTTCCTCGTGCAACTGTCCCACACGCAACCGGTACCTGGAGCAGGAGCAGCGCAGGCAGTATCGCCAGAGGATTGCCGACACGGAACTCGAACGCACGTATGTCACCATGGCCAAGACGTTGGGTGTGGCCACAAAGTCTCTGAGGGCAGCCAATCCGGTGGATGCGTTGTTGTGTCACTTTTGCCATGGTCTTCCATTTCCGTGCTCCAGCGCACAGATTACGTCAAATGGTCAAGATGAGGGGGCGTGTCTTACACTACAGCACTTTGCTGTGATTCGACGGCAGCAGAAAGATGACGAATTGGAACGCCGGAAGGCGGGGCTTTATCGTCGCTATGCTGTGCTCGCGGCACATCCGTACCTCAACCGTACGGCAGCACGATTGGAGAGGATCGCCAAAGAAAGCCAGACGGGCAAAGGTAAAGAAGAGGCAGCCTTCGCTTTAGCATCTGCTCATGACGTAACCATGGCGCCATTGCTAAGCGCGCTCGGTCTGGAAGGGGCGGGATTTCCGAAGTTTGCAGCCCGCCTAGTGTTTGAGCTGTGGAGTAGCCCTGAAGACAAAGAGAGAAAGAATGATAGAAAACGAGGAAAGTGGTTGGACAATATGTTTATTCGTGTTCTCTATAACGGAGAGGACTTGACCTTTGACACAGCTTTCTGCCATGACCACAATCGACGCTCTGCTCAGCCGCTGTGCCCTCTGGGTAATTTCCTGTCTTTTGTGAGAAAGGATATGTTCAATATTGTCAATGCTACGAGTTACCAGCAGGCCTGCCACCAAATTGTACTGTAAAATATGAATGTGAATGAGAAATGAGAGAGAGTACCAAGGGAAGATAAACAGGAATAGTTTACCTAAATATTCTGCGCAATTCTGTCATCATTTGCTGCTTCATGTCGTTTCAAACCCATATGACTTTTTGAGGAAAAATTAAGAGACTCCAAAAAAGCAAAAAATCCCCCTAAATGTCCATACAATTATGCATTATATTCCAAGGAGTTTCCAGGTGCTTGTCACTGCGTGATTTCATTGTATGCATCAAGAGCAGCATGAACATTTTTCAAAATGTCTCCTTTTGTGTTCCGAAGAAGGTTTGGAATGACGTGAAGGTGAGAAAATGACAGAATTTTCATTTCGGGGTGAACTGTTACTTTAAGACTTTAAGAGTACTACTAATGTTTTTGATATAGTGTTAGGTCTGTGGACCAAATAATTGTCCTGCACAACACTTGGTACACTTAGCTAATCACATCAAATCAACTGACAAAAAACTGAAGACGTTTACAGCAATCATTGAGATTGAGATTTTAAAATGTAGTCACTGAATATGTACATCTGGATGATGACGATGGTTTTATATGTGATGTGATGTCAAGGATCCTTCAAAAACATCTACAGAGGGTAGTCAACCAGAATGCCTTTTACCGCCAAATTACCCGCAAAGCCACCGCGGCAAAAATAAA

Function

symbol description
pxylp1 Predicted to enable phosphatase activity. Predicted to be involved in several processes, including chondroitin sulfate proteoglycan biosynthetic process; glycosaminoglycan biosynthetic process; and positive regulation of heparan sulfate proteoglycan biosynthetic process. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in nervous system; notochord; otic vesicle; pectoral fin; and polster. Orthologous to human PXYLP1 (2-phosphoxylose phosphatase 1).

GO:      GO:0008969, GO:0016791, GO:0016787, GO:0008330, GO:0052629, GO:0016312, GO:0043812, GO:0043813, GO:0017161, GO:0008579, GO:0010909, GO:0016021, GO:0016020, GO:0030487, GO:0052830, GO:0052831, GO:0005794, GO:0008138, GO:0017017, GO:0030351, GO:0030352, GO:1990003, GO:0052867, GO:0052829, GO:0052828, GO:0050650, GO:0043726, GO:0052825, GO:0052745, GO:0019178, GO:0006024, GO:0019198, GO:0003993, GO:0000139

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000225_00425270_00431446.mRNA True 2165 mRNA 0.48 5 424599 431446

Neighbor

gene id symbol gene type direction distance location
CI01000225_00404519_00407448 NA coding downstream 15970 404375 ~ 408629 (-)
CI01000225_00393863_00402338 NA coding downstream 22061 393863 ~ 402538 (-)
CI01000225_00383340_00392393 NA coding downstream 32206 383087 ~ 392393 (-)
CI01000225_00195825_00204991 SGPP2 coding downstream 219608 195709 ~ 204991 (-)
CI01000225_00166452_00178904 NA coding downstream 245695 164269 ~ 178904 (-)
CI01000225_00553926_00616121 NA coding upstream 122480 553926 ~ 616121 (-)
CI01000225_00724320_00725003 NA coding upstream 292855 724301 ~ 725468 (-)
G395314 NA non-coding downstream 4948 419354 ~ 419651 (-)
G395335 NA non-coding downstream 6025 418314 ~ 418574 (-)
G395333 NA non-coding downstream 7856 416302 ~ 416743 (-)
G395330 NA non-coding downstream 10533 413743 ~ 414066 (-)
G395150 NA non-coding downstream 175169 249221 ~ 249430 (-)
G395341 NA non-coding upstream 21801 453247 ~ 454400 (-)
G395347 NA non-coding upstream 28729 460175 ~ 460425 (-)
G395340 NA non-coding upstream 30710 462156 ~ 522868 (-)
G395337 NA non-coding upstream 79443 510889 ~ 531490 (-)
G395356 NA non-coding upstream 105406 536852 ~ 537088 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location