XLOC_012233 (CR628327.1)


Basic Information

Item Value
gene id XLOC_012233
gene name CR628327.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 33418262 ~ 33460893 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024110
AGTATATGCATGGCTTTGTCCAAATTCATCCCCAACTGAAGCCACACCGGACACGTCTTGATCAGTTTCTCTAGTATGCTGATTCCAGGAGGCACAGATGACAGGCGTACCTCATCTGTAACTTGGTTGGCTCTCATTGTGATATCTTCTACTGTCATGTCGGCCATCTTGCTGGTGTCCAAGTTCGCCTCTCCTCCTGTGACCTTAAGTTCCACGCTCTGGGGTCTGAAGGCAAAGGTCAAAGTTTAGAGGCCATTGAATCAAACACAAACGAAGATGCCCACAGAAAAAGCTTTCCCTACTACCTGGAATCTGAAGGAATTCTGTCATCGTTACCCAGCCTGATGttcatcaaataaaatgtttaatgtgaAGCTCTGGAGAGGACTATAA
>TCONS_00024939
ATTGTTTTTTGAGTTGCATCCCTCCTGACtagaaatatctgaaaaatcaaacaaataacacaaagttcaacagaaaaaaaagtgttaaataaattatatcatGGGAACTCCTTGCTCAGTATATGCATGGCTTTGTCCAAATTCATCCCCAACTGAAGCCACACCGGACACGTCTTGATCAGTTTCTCTAGTATGCTGATTCCAGGAGGCACAGGTTTGTTGCTCTTGCTCACTGGAGATGTTGGAACCGGGGGTTTTGGGACTACTGGTGGAGGGGGTCTGGCCTGAGGTGGAGACGAGGGTCTTGCAGTGGGAGGCGGAGGTGGTCTAGGTAGGCCAGAGGACGAGCTCTTTGGAAGAGCAGAAGGAAGTTGTGCTGGAAGAGGTGGCTTTGGGACCTGAGGAGACATCATGGGCTTGTGTGGAGGAGGTGGAGATGGTTTGGAGTTAAGTTGGGGTGATGAAACAGGGAGTAGGAAGGAGGTGGTGGGGTCAGGGGATGGGTCGTCGGAGACATCCACCAATGGGAAGGCTGGAGTAGAAGGAGAGGTTTgtggatggaaag

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0016070 RNA metabolic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1901861 regulation of muscle tissue development biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0016202 regulation of striated muscle tissue development biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048634 regulation of muscle organ development biological_process
GO:0071696 ectodermal placode development biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0014706 striated muscle tissue development biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0009790 embryo development biological_process
GO:0005730 nucleolus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097759

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024110 False 393 lncRNA 0.46 2 33418262 33456442
TCONS_00024939 True 565 lncRNA 0.49 2 33455995 33460893

Neighbor

gene id symbol gene type direction distance location
XLOC_012232 ccdc28a coding downstream 2242 33388899 ~ 33416020 (-)
XLOC_012231 efr3ba coding downstream 128913 33232748 ~ 33289349 (-)
XLOC_012230 AL590149.1 coding downstream 186548 33206780 ~ 33231714 (-)
XLOC_012229 NA coding downstream 255784 33145594 ~ 33162478 (-)
XLOC_012228 NA coding downstream 279886 33133819 ~ 33138376 (-)
XLOC_012234 tmem121aa coding upstream 40873 33501766 ~ 33552363 (-)
XLOC_012235 NA coding upstream 103989 33564882 ~ 33571806 (-)
XLOC_012236 si:dkey-84k17.2 coding upstream 227327 33688220 ~ 33716688 (-)
XLOC_012237 NA coding upstream 1200505 34661398 ~ 34691556 (-)
XLOC_012238 NA coding upstream 1245886 34706779 ~ 34805758 (-)
XLOC_012219 CR407546.1 non-coding downstream 1172007 32246129 ~ 32246255 (-)
XLOC_012218 NA non-coding downstream 1282134 32127897 ~ 32136128 (-)
XLOC_012245 BX255944.2 non-coding upstream 2093678 35554571 ~ 35846256 (-)
XLOC_012246 BX255944.1 non-coding upstream 2157093 35617986 ~ 35618104 (-)

Expression


Co-expression Network