Fish Transcriptome and Expression Database

Home /
Search /
- Gene
- RNA
- Bioproject
Expression /
Analysis /
- Coding ability prediction
- Expression count
- Visual Omics
Tools /
- Neighbor
- BLAST
Statistics /
Download /
Help

economic fish

G395150

Basic Information

Item	Value
gene id	G395150
gene name	NA
gene type	non-coding
species	grasscarp (Ctenopharyngodon idella)
category of species	economic fish

Chromosome Information

Item	Value
chromosome id	CI01000225
NCBI id	null
chromosome length	750214
location	249221 ~ 249430 (-)
genome version	v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU452739
GCATTTCTCACTTTCCAAACCACCACCAGAATACCTTTGGCAATATTCTAAACAAATAGAGACTAAACATGATGGAAGAAGATTGAACCGTCATGCTTTCATTCAATTGTACATTAACAGCTGAATCTGTGTCAGATGTTGCACTACAAATAGCTGTCACTGAGAATACTTATTCCTGTGAATAAGTATGAAATGGATGTGTAGTTTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TU452739	True	210	lncRNA	0.36	1	249221	249430

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
CI01000225_00195825_00204991	SGPP2	coding	downstream	44230	195709 ~ 204991 (-)
CI01000225_00166452_00178904	NA	coding	downstream	70317	164269 ~ 178904 (-)
CI01000225_00111148_00126263	NA	coding	downstream	121434	110001 ~ 128097 (-)
CI01000225_00052354_00104366	TIAM1B, TIAM1	coding	downstream	143070	52092 ~ 106151 (-)
CI01000225_00044417_00045162	NA	coding	downstream	204059	44255 ~ 45162 (-)
CI01000225_00383340_00392393	NA	coding	upstream	133657	383087 ~ 392393 (-)
CI01000225_00393863_00402338	NA	coding	upstream	144433	393863 ~ 402538 (-)
CI01000225_00404519_00407448	NA	coding	upstream	154945	404375 ~ 408629 (-)
CI01000225_00425270_00431446	PXYLP1	coding	upstream	175169	424599 ~ 431446 (-)
CI01000225_00553926_00616121	NA	coding	upstream	304496	553926 ~ 616121 (-)
G395142	NA	non-coding	downstream	14907	220464 ~ 234314 (-)
G395123	NA	non-coding	downstream	54661	193310 ~ 194560 (-)
G395114	NA	non-coding	downstream	62019	186842 ~ 187202 (-)
G395330	NA	non-coding	upstream	164313	413743 ~ 414066 (-)
G395333	NA	non-coding	upstream	166872	416302 ~ 416743 (-)
G395335	NA	non-coding	upstream	168884	418314 ~ 418574 (-)
G395314	NA	non-coding	upstream	169924	419354 ~ 419651 (-)
G395341	NA	non-coding	upstream	203817	453247 ~ 454400 (-)

Expression

Co-expression Network