Gene
RNA
| Item | Value |
|---|---|
| gene id | G395314 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000225 |
| NCBI id | null |
| chromosome length | 750214 |
| location | 419354 ~ 419651 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU452963 | True | 298 | lncRNA | 0.38 | 1 | 419354 | 419651 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000225_00404519_00407448 | NA | coding | downstream | 10725 | 404375 ~ 408629 (-) |
| CI01000225_00393863_00402338 | NA | coding | downstream | 16816 | 393863 ~ 402538 (-) |
| CI01000225_00383340_00392393 | NA | coding | downstream | 26961 | 383087 ~ 392393 (-) |
| CI01000225_00195825_00204991 | SGPP2 | coding | downstream | 214363 | 195709 ~ 204991 (-) |
| CI01000225_00166452_00178904 | NA | coding | downstream | 240450 | 164269 ~ 178904 (-) |
| CI01000225_00425270_00431446 | PXYLP1 | coding | upstream | 4948 | 424599 ~ 431446 (-) |
| CI01000225_00553926_00616121 | NA | coding | upstream | 134275 | 553926 ~ 616121 (-) |
| CI01000225_00724320_00725003 | NA | coding | upstream | 304650 | 724301 ~ 725468 (-) |
| G395335 | NA | non-coding | downstream | 780 | 418314 ~ 418574 (-) |
| G395333 | NA | non-coding | downstream | 2611 | 416302 ~ 416743 (-) |
| G395330 | NA | non-coding | downstream | 5288 | 413743 ~ 414066 (-) |
| G395150 | NA | non-coding | downstream | 169924 | 249221 ~ 249430 (-) |
| G395142 | NA | non-coding | downstream | 185040 | 220464 ~ 234314 (-) |
| G395341 | NA | non-coding | upstream | 33596 | 453247 ~ 454400 (-) |
| G395347 | NA | non-coding | upstream | 40524 | 460175 ~ 460425 (-) |
| G395340 | NA | non-coding | upstream | 42505 | 462156 ~ 522868 (-) |
| G395337 | NA | non-coding | upstream | 91238 | 510889 ~ 531490 (-) |
| G395356 | NA | non-coding | upstream | 117201 | 536852 ~ 537088 (-) |
