G395340


Basic Information

Item Value
gene id G395340
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000225
NCBI id null
chromosome length 750214
location 462156 ~ 522868 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU452996
ATTAATACACAAACAACAAATGCATTGATGATCATCCCGGCAGTAAATCTCCAGAAGTTTCCCATGACTGAGGCAGATGTTCTCCTGAATGTTTCTGGAAGCTTCGACTAGTTTGTGCTTCATAAACGCAGGAGATTCATAGTGAAGCTGCAGGTGAGTTTGACAGAAGGAGGCCAAGCACTGCAGACAGGACTTTACAGCTCTGTTCTTCTCTGTAGTGCAAACATCACACTCCACAGCAGCCGTTTGTAGGGACGTCTTCTGCAGCGTCTCCATCATCTCAGCTATCAGAGTGTTCTTCTTCAGTAGAGGTCTCTGACTGAAGCTGTAAATAAAATGATTATTGTAACACGTTTTACAAGAAAATACTATATTTTAGCCTTTCTACTTCAAACTGTCACGTTTTTTAATGTCGCATGAAAGTTGCAATCCTACAGACATTAGTCAGGGTAGCTCCAAACTAATTTTTGACAGGAATGAAGGGAGGGATAGACGTACAGTGG
>TU452997
TCCATTCAGATTCCAGTGAAACCAAACGGTGTCCGTTATGATTGTCAATCATACACAGGTAACAAATACATTGACGATCATCCTGACAGTAAATCTCCAGAAGTTTCCCATGACTGAGGCAGATGTTCTCCTGAATGTTTCTGGAAGCTTCGACTAGTTTGTGCTTCATAAACGCAGGAGATTCATAGTGAAGCTGCAGGTGAGTTTGACAGAAGGAGGCCAAGCACTGCAGACAGGACTTTACAGCTCTGTTCTTCTCTGTAGTGCAAACATCACACTCCACAGCAGCCGTTTGTAGGGACGTCTTCTGCAGCGTCTCCATCATCTCAGCTATCAGAGTGTTCTTCTTCAGTAGAGGTCTCTGACTGAAGCTGTAAATAAAATGATTATTGTAACACGTTTTACAAGAAAATACTATATTTTAGCCTTTCTACTTCAAACTGTCACGTTTTTTAATGTCGCATGAAAGTTGCAATCCTACAGACATTAGTCAGGGTAGCTCCAAACTAATTTTTGACAGGAATGAAGGGAGGGATAGACGTACAGTGG
>TU452998
TCCATTCAGATTCCAGTGAAACCAAACGGTGTCCGTTATGATTGTCAATCATACACAGGTAACAAATACATTGACGATCATCCTGACAGTAAATCTCCAGAAGTTTCCCATGACTGAGGCAGATGTTCTCCTGAATGTTTCTGGAAGCTTCGACTAGTTTGTGCTTCATAAACGCAGGAGATTCATAGTGAAGCTGCAGGTGAGTTTGACAGAAGGAGGCCAAGCACTGCAGACAGGACTTTACAGCTCTGTTCTTCTCTGTAGTGCAAACATCACACTCCACAGCAGCCGTTTGTAGGGACGTCTTCTGCAGCGTCTCCATCATCTCAGCTATCAGAGTGTTCTTCTTCAGTAGAGGTCTCTGACTGAAGCTGTAAATAAAATGATTATTGTAACACGTTTTACAAGAAAATACTATATTTTAGCCTTTCTACTTCAAACTGTCACGTTTTTTAATGTCGCATGAAAGTTGCAATCCTACAGACATTAGTCAGGGTAGCTCCAAACTAATTTTTGACAGGAATGAAGGGAGGGATAGACGTACAGTGG
>TU452999
CACAAACAACAAATGCATTGATGATCATCCTGACAGTAAATCTCCAGAGGTTTCCCATGACTGAGGCAGATGTTCTCCTGAATGTTTCTGGAAGCTTCGACTAGTTTGTGCTTCATAAACGCAGGAGATTCATAGTGAAGCTGCAGGTGAGTTTGACAGAAGGAGGCCAAGCACTGCAGACAGGACTTTACAGCTCTGTTCTTCTCTGTAGTGCAAACATCACACTCCACAGCAGCCGTTTGTAGGGACGTCTTCTGCAGCGTCTCCATCATCTCAGCTATCAGAGTGTTCTTCTTCAGTAGAGGTCTCTGACTGAAGCTGTAAATAAAATGATTATTGTAACACGTTTTACAAGAAAATACTATATTTTAGCCTTTCTACTTCAAACTGTCACGTTTTTTAATGTCGCATGAAAGTTGCAATCCTACAGACATTAGTCAGGGTAGCTCCAAACTAATTTTTGACAGGAATGAAGGGAGGGATAGACGTACAGTGG
>TU453001
TCCATTCAGATTCCAGTGAAACCAAACGGTGTCCGTTATGATTGTCAATCATACACAGGTAACAAATACATTGACGATCATCCTGACAGTAAATCTCCAGAAGTTTCCCATGACTGAGGCAGATGTTCTCCTGAATGTTTCTGGAAGCTTCGACTAGTTTGTGCTTCATAAACGCAGGAGATTCATAGTGAAGCTGCAGGTGAGTTTGACAGAAGGAGGCCAAGCACTGCAGACAGGACTTTACAGCTCTGTTCTTCTCTGTAGTGCAAACATCACACTCCACAGCAGCCGTTTGTAGGGACGTCTTCTGCAGCGTCTCCATCATCTCAGCTATCAGAGTGTTCTTCTTCAGTAGAGGTCTCTGACTGAAGCTGTAAATAAAATGATTATTGTAACACGTTTTACAAGAAAATACTATATTTTAGCCTTTCTACTTCAAACTGTCACGTTTTTTAATGTCGCATGAAAGTTGCAATCCTACAGACATTAGTCAGGGTAGCTCCAAACTAATTTTTGACAGGAATGAAGGGAGGGATAGACGTACAGTGG
>TU453002
ATTAATACACAAACAACAAATGCATTGATGATCATCCCGGCAGTAAATCTCCAGAAGTTTCCCATGACTGAGGCAGATGTTCTCCTGAATGTTTCTGGAAGCTTCGACTAGTTTGTGCTTCATAAACGCAGGAGATTCATAGTGAAGCTGCAGGTGAGTTTGACAGAAGGAGGCCAAGCACTGCAGACAGGACTTTACAGCTCTGTTCTTCTCTGTAGTGCAAACATCACACTCCACAGCAGCCGTTTGTAGGGACGTCTTCTGCAGCGTCTCCATCATCTCAGCTATCAGAGTGTTCTTCTTCAGTAGAGGTCTCTGACTGAAGCTGTAAATAAAATGATTATTGTAACACGTTTTACAAGAAAATACTATATTTTAGCCTTTCTACTTCAAACTGTCACGTTTTTTAATGTCGCATGAAAGTTGCAATCCTACAGACATTAGTCAGGGTAGCTCCAAACTAATTTTTGACAGGAATGAAGGGAGGGATAGACGTACAGTGG
>TU453000
ATTAATACACAAACAACAAATGCATTGATGATCATCCCGGCAGTAAATCTCCAGAAGTTTCCCATGACTGAGGCAGATGTTCTCCTGAATGTTTCTGGAAGCTTCAACTAGTTTGTGCTTCATAAACGCAGGAGATTCATAGTGAAGCTGCAGGTGAGTTTGACAGAAGGAGGCCAAGCACTGCAGACAGGACTTTACAGCTCTGTTCTTCTCTGTAGTGCAAACATCACACTCCACAGCAGCCGTTTGTAGGGACGTCTTCTGCAGCGTCTCCATCATCTCAGCTATCAGAGTGTTCTTCTTCAGTAGAGGTCTCTGACTGAAGCTCTCTCTGCATTGGGGACAGCGGTACGGCGGCCCCTGCTCCTTCTGGCCCCAGCAGTCAGTAATACAGCTCATACAGTAACTGTGTCCACAGGGAATCGTCACCGGCTCCTTCAGAGGATCCAAACAGACTGGACAGCTGAACTGATCCACATACTGACTCGCTGCAGATTCAGACATTTCTTTGCAGTGTTCAAAGATGAACAGATTCTCAGTCTCTGTCCTGTAATAAGGGCTGTTTTGCCAAGAAAAGCAACATTAATTGTCAAATGCCAAATTTCACTTAAGTTAAAGTATGGATACTGCCAAGATTTTACATATAATCAACAATAACATGAGAGAAGCTTGGGAATATATCATGGCACTTTGCAATCTGTGTAGTGCTCGCCATATTTTAGGACTCTCTGGAGCAAACAGAGGCTGCATCCTTTGAAGGCCGTGTTCGAAGGCCGAATGAATCACAGCAACGAAGCCTGTCTAAATTCGAAGGCTACCTCAAATGTGTTGTCAAAATGCATCTATCGTTTCCCGTGCAATGAGGGATCCAACAGATGGACCCTTTG
>TU453003
ATTAATACACAAACAACAAATGCATTGATGATCATCCCGGCAGTAAATCTCCAGAAGTTTCCCATGACTGAGGCAGATGTTCTCCTGAATGTTTCTGGAAGCTTCAACTAGTTTGTGCTTCATAAACGCAGGAGATTCATAGTGAAGCTGCAGGTGAGTTTGACAGAAGGAGGCCAAGCACTGCAGACAGGACTTTACAGCTCTGTTCTTCTCTGTAGTGCAAACATCACACTCCACAGCAGCCGTTTGTAGGGACGTCTTCTGCAGCGTCTCCATCATCTCAGCTATCAGAGTGTTCTTCTTCAGTAGAGGTCTCTGACTGAAGCTCTCTCTGCATTGGGGACAGCGGTACGGCGGCCCCTGCTCCTTCTGGCCCCAGCAGTCAGTAATACAGCTCATACAGTAACTGTGTCCACAGGGAATCGTCACCGGCTCCTTCAGCCCATCTAAACAGACTGGACAGCTGAACTGATCCGCATACTGACTCGCTGCAGAATCTGCCATTTTCGCTTTTGTTCTGTAATAAAATCTGTTTTGCCAAGAAAAGCAACATTAATTGTCAAATGCCAAATTTCACTTAAGTTAAAGTATGGATACTGCCAAGATTTTACATATAATCAACAATAACATGAGAGAAGCTTGGGAATATATCATGGCACTTTGCAATCTGTGTAGTGCTCGCCATATTTTAGGACTCTCTGGAGCAAACAGAGGCTGCATCCTTTGAAGGCCGTGTTCGAAGGCCGAATGAATCACAGCAACGAAGCCTGTCTAAATTCGAAGGCTACCTCAAATGTGTTGTCAAAATGCATCTATCGTTTCCCGTGCAATGAGGGATCCAACAGATGGACCCTTTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU452996 False 503 lncRNA 0.42 2 462156 493401
TU452997 False 549 lncRNA 0.42 2 462156 522868
TU452998 False 549 lncRNA 0.42 3 462156 522868
TU452999 False 496 lncRNA 0.42 2 462156 486701
TU453001 False 549 lncRNA 0.42 3 462156 522868
TU453002 False 503 lncRNA 0.42 3 462156 493401
TU453000 False 887 lncRNA 0.45 2 479063 493401
TU453003 True 857 lncRNA 0.45 2 479063 493401

Neighbor

gene id symbol gene type direction distance location
CI01000225_00425270_00431446 PXYLP1 coding downstream 30710 424599 ~ 431446 (-)
CI01000225_00404519_00407448 NA coding downstream 53527 404375 ~ 408629 (-)
CI01000225_00393863_00402338 NA coding downstream 59618 393863 ~ 402538 (-)
CI01000225_00383340_00392393 NA coding downstream 69763 383087 ~ 392393 (-)
CI01000225_00195825_00204991 SGPP2 coding downstream 257165 195709 ~ 204991 (-)
CI01000225_00553926_00616121 NA coding upstream 31058 553926 ~ 616121 (-)
CI01000225_00724320_00725003 NA coding upstream 201433 724301 ~ 725468 (-)
G395347 NA non-coding downstream 1731 460175 ~ 460425 (-)
G395341 NA non-coding downstream 7756 453247 ~ 454400 (-)
G395314 NA non-coding downstream 42505 419354 ~ 419651 (-)
G395335 NA non-coding downstream 43582 418314 ~ 418574 (-)
G395333 NA non-coding downstream 45413 416302 ~ 416743 (-)
G395356 NA non-coding upstream 13984 536852 ~ 537088 (-)
G395357 NA non-coding upstream 14865 537733 ~ 538115 (-)
G395363 NA non-coding upstream 25241 548109 ~ 548339 (-)
G395379 NA non-coding upstream 118075 640943 ~ 671296 (-)
G395371 NA non-coding upstream 126776 649644 ~ 676622 (-)

Expression


Co-expression Network