XLOC_012235


Basic Information

Item Value
gene id XLOC_012235
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 33564882 ~ 33571806 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024940
ctaatcaaacacacctgaatcaactcatcagaacataagaAGAGACGCCAAAATCTGAAGTTAAGGGTTCAGATAAGGAAGACATCCAAAATACATAccgttggtgtgccttcaggaacaagGCAAAGGCATTGAGAGCGTAATGAGTGACAGCACAAAGGCATCGCTCTCCCTGCTTCTGCAAACCAGGCACCCTGGCAAACTGAGTCCCAAGCCTCCCATTTGGTGCCTACAGCGGAGAACACACAGCTGAATAACAACGAAGATCCGTGATGGAGTGGTGACCCCGAGCCAGCTgtgaagacaaacaaacaaactctcaGCAGATGCTCGATATCCCACCGCCCACCTCCAAATAGCCCAGCGgcgACTCCAGCACTGGACTGTTTCTGCAGCCTCTTTGTTAACAACCTTGATCCTTAACTATCAAGCTACTGTCCACAACATCAGATGAGTaggctgtgtgtatgtgtatgtgtgtgtgttttttatcctTGCTTTTATCACTAACAAGCCTGTCACTTCCACAtttaaatgagtgtgtgtttgttttttgtttttttctgtatgcGCAGGAGAGTCAGACAGGGGGAAAGATAGGATTTGAATGCTTATAGATTGTTTGTTATTTGCGTTAAGTGATAATGACAGCTCACCAAGGGGGTGAAATTTGTGTTGTATGATCTATCTGTATTCATTCTGTTTAATACATACACTTAGTGTTGATCTGAAAACCAACAGCATTATACTGTATGCGCTGACTCTAATGGACTCTTTTTGGAAGAAGGATACTGCTGAGTGGCCTCTTCAAATCAGCATTGCAAAACAGCCCTCTGTACACAGAATACAGGTCGACGAGAGACAATTACTGCATTCCAGCAGAGTGGCTGAGTGAAACCAGAACTTATCATGAGATGATGGCAGAGCCAATATCAGGAGTGATGAGCGCATCCATGAGAAAAGAGAAAGGCAATTAGATCATTTTAGAGGGCCTatcgttttttttcttttctttttcttttgctaCTGTTTCTCCTCTCCCACTCCAAGTATAATGGACCCTGATGTGAGATATCATTTGAGCCTAGGCATTAGTTTTGGAGGAATGGTCACCAGCAGAGTAAAAATATTTAGAGAACTGCATGTTATGAATCATTATTATGTCACACAAAAGCCAGTATTGTAAATCCCATGACTCCAGGCAGGGAGTATAATGACTGAGTGCCACTTTTGGATTTTCAGTTAAAGCCAGTTGGAAAGTTTTTGATATTAAAC
>TCONS_00024542
GCCTCCCATTTGGTGCCTACAGCGGAGAACACACAGCTGAATAACAACGAAGATCCGTGATGGAGTGGTGACCCCGAGCCAGCTgtgaagacaaacaaacaaactctcaGCAGATGCTCGATATCCCACCGCCCACCTCCAAATAGCCCAGCGgcgACTCCAGCACTGGACTGTTTCTGCAGCCTCTTTGTTAACAACCTTGATCCTTAACTATCAAG
>TCONS_00024941
caaacacacctgaatcaactcatcagaacataagaAGAGACGCCAAAATCTGAAGTTAAGGGTTCAGATAAGGAAGACATCCAAAATACATAccgttggtgtgccttcaggaacaagGCAAAGGCATTGAGAGCGTAATGAGTGACAGCACAAAGGCATCGCTCTCCCTGCTTCTGCAAACCAGGCACCCTGGCAAACTGAGTCCCAAGCCTCCCATTTGGTGCCTACAGCGGAGAACACACAGCTGAATAACAACGAAGATCCGTGATGGAGTGGTGACCCCGAGCCAGCTgtgaagacaaacaaacaaactctcaGCAGATGCTCGATATCCCACCGCCCACCTCCAAATAGCCCAGCGGTATTTCCCTATCAAACTCTATTTATATGTACATTTTGATGCATGGTACAGTAATGACTTGACCTGCTTGTGATACGAGGGTCATGAAAGTGCATTGCGGGCGTGATGGCGGTGACTCTGTGTGGTGGGCTGTGCAGAGCTGAAAGGTCAGCACTTTTGCTGGTCCATAAATCCGTCATGCTCTCCCTTTCCCCCCGTCTGGGGACTGGAAGTGCTCTCTGGGGCAGACGGCATCTAACTGGTGGCGAAATCCCATTTATCACTCAGAGTCCTCGCCCCATCCCCCTGCTATTGAGCCACACCATAGAAGGTTGGATTGTCTTTGTATGCTTCACATATGACAGCTTTTGTCTGTTTGCTAACTGAGACATTAGTGCTTCTTTGATGCTGGATTTTGTCTTTACCAGCCGcgatttgacctttttaccaccCACTTATTCGCACCTACACACAGAAGACAAGCAGAACCGTCACTCTGCATTGTGGAACACTGGTATTTTTGAGCCTGAAAAGCAAATGAGTCAATTGACCACAGCTTTTTAAGATACACTTTAATAAAACATTGGATAGTGga

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024940 False 1275 lncRNA 0.42 3 33564882 33571806
TCONS_00024542 False 218 lncRNA 0.52 2 33565726 33570319
TCONS_00024941 True 935 lncRNA 0.47 2 33569593 33571801

Neighbor

gene id symbol gene type direction distance location
XLOC_012234 tmem121aa coding downstream 12519 33501766 ~ 33552363 (-)
XLOC_012233 CR628327.1 coding downstream 103989 33418262 ~ 33460893 (-)
XLOC_012232 ccdc28a coding downstream 148862 33388899 ~ 33416020 (-)
XLOC_012231 efr3ba coding downstream 275533 33232748 ~ 33289349 (-)
XLOC_012230 AL590149.1 coding downstream 333168 33206780 ~ 33231714 (-)
XLOC_012236 si:dkey-84k17.2 coding upstream 116414 33688220 ~ 33716688 (-)
XLOC_012237 NA coding upstream 1089592 34661398 ~ 34691556 (-)
XLOC_012238 NA coding upstream 1134973 34706779 ~ 34805758 (-)
XLOC_012239 kidins220a coding upstream 1237837 34809643 ~ 34963575 (-)
XLOC_012240 mboat2a coding upstream 1397317 34969123 ~ 35076730 (-)
XLOC_012229 NA non-coding downstream 402404 33145594 ~ 33162478 (-)
XLOC_012228 NA non-coding downstream 426506 33133819 ~ 33138376 (-)
XLOC_012219 CR407546.1 non-coding downstream 1318627 32246129 ~ 32246255 (-)
XLOC_012245 BX255944.2 non-coding upstream 1982765 35554571 ~ 35846256 (-)
XLOC_012246 BX255944.1 non-coding upstream 2046180 35617986 ~ 35618104 (-)
XLOC_012248 AL929378.2 non-coding upstream 2329259 35901065 ~ 36340579 (-)

Expression


Co-expression Network