G395371


Basic Information

Item Value
gene id G395371
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000225
NCBI id null
chromosome length 750214
location 649644 ~ 676622 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU453035
GTACACTGATGCTTCTGTCACATCAATGCCACACTCTCTCAGGTCTTCCTCATAGAAGATCACATTGCCTTTCACAAGCTGCTGAAAAGCCACTTTCCCCAGTTTGAGGATCATGTCTTCATCTGTCACGTTCTTCTCATAGTCCTTCTCATGTTTGATGTTGGTCTGAAGGATCAGGAAGTGTGTGTACATTTGAGTGAGAGTCTTGGGAATCTCTCCACTTTCTGCTTCGCTCAACATCTTCTCTAGAACAGCGGCTGAGATCCAGCAGAACACTGGGATGTGGCACATGATGTAGAGGCTCCTTGATGACTTCAGGTGTGTGATGATTGTATTGGCCAGACTCTGATCACTGATTCTCTTCCTGAAGTATTCCTCCTTCTGTGGCTCATTGAAGCCTCGTACCTCTGTCACTCGATGGACACACTCAGAGGGGACGAGATCAGCTGCTGCTGGTCTGGAGGTGATCCAGATGAGAGCAGAGGGAAGCAGATTCCCTGTAATGAGGTTCGTCAGCAGCACATCCACTGAGGCTGATTCACTTACATCACACAACCTCAC
>TU453038
TTGGTCAAACACATTTATGTTGTTGTTTGTACAGGAGAGGTGCACATATAGAGCCGCTAGATGTTCCTGAATGCTCAGATGAACAAAGCAGAAGACTTTCCCCTGATACCAGCCAAACTCCTCTCTGAAGATCTGAGTGCACAATCCTGAGTACACTGATGCTTCTGTCACATCAATGCCACACTCTCTCAGGTCTTCCTCATAGAAGATCACATTGCCTTTCACAAGCTGCTGATAAGCCACTTTCCCCAGTTTGAGGATCATGTCTTCATCTGTCACGTTCTTCTCATAGTCCTTCTCATGTTTGATGTTGGTCTGAAGGATCAGGAAGTGTGTGTACATTTGAGTGAGAGTCTTGGGAATCTCTCCACTCTCTGCTTCACTCATCATCTTCTCTAGAACAGCGGCTGAGATCCAGCAGAACACTGGGATGTGGCACATGATGTAGAGGCTCCTTGATGACTTCAGGTGTGAGATGATTGTATTGGCCAGACTCTGATCACTGATTCTCTTCCTGAAGTATTCCTCCTTCTGTGGATCATTGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU453035 False 561 lncRNA 0.48 2 649644 676472
TU453038 True 545 lncRNA 0.45 2 649810 676622

Neighbor

gene id symbol gene type direction distance location
CI01000225_00553926_00616121 NA coding downstream 33523 553926 ~ 616121 (-)
CI01000225_00425270_00431446 PXYLP1 coding downstream 218198 424599 ~ 431446 (-)
CI01000225_00404519_00407448 NA coding downstream 241015 404375 ~ 408629 (-)
CI01000225_00393863_00402338 NA coding downstream 247106 393863 ~ 402538 (-)
CI01000225_00383340_00392393 NA coding downstream 257251 383087 ~ 392393 (-)
CI01000225_00724320_00725003 NA coding upstream 47679 724301 ~ 725468 (-)
G395363 NA non-coding downstream 101305 548109 ~ 548339 (-)
G395357 NA non-coding downstream 111529 537733 ~ 538115 (-)
G395356 NA non-coding downstream 112556 536852 ~ 537088 (-)
G395337 NA non-coding downstream 118154 510889 ~ 531490 (-)
G395340 NA non-coding downstream 126776 462156 ~ 522868 (-)

Expression


Co-expression Network