XLOC_012236 (si:dkey-84k17.2)


Basic Information

Item Value
gene id XLOC_012236
gene name si:dkey-84k17.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 33688220 ~ 33716688 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024112
CGGAAAAAAGTGGGCTGTCTACAATTCTTATTGGTCAGAACTCACGTCAATCATTTACCGCGCCAAAACGACAACTAATCAAAACAGCGTTAAGTCCCTCAACTAGGAAGTGACTCTTGCTCAACGACCATTGCTGCTGTCAACAAGAAAATATTAGTATTATAAACAAAATGCAGCGCACAAAGAGCGTTAAAGTGAAAGAAGTCATAACGTCTCTCTGTAAACTACTTTCTGGATTAAACGTTGAGTCGATTCCGACAGCTGAGACATTCAGGAGAGCCAAGTTCAACAGAAAAGATGCGGTGGTGGACATGTGGAGTTTGTTAAATAGGCTTCTGCAGAGAGCCTTTGCACTGGACTGTGCGTGCCGGGACTCTAAACACCAAGAGTTTGACACACAGCTGCTGTTTGTGAGGAGTGCTCTGTGTTACTGTGGCTATGGGGCTCCTTGGGTGGTGGAGCCCAGGCCCACGAGTCACATAGAGGAGATGGAGAGCCGAGATCTGCTGTTGGCGCTTGGCTGgctgctggcatcgggaaatctgCTGGACTTCCTGCTGGCAGAGAAGGTTTATCAGTTAGACACGCTCTCTTCTGCACCAACGATCCCCCAGGGTCCAATTAGTGGGCTGGATGATCTAATGGCATGTGGATCAGGTGAGGAACTCACGGTGAAGAAGGATCAAGAAATTCAGGCACTGCAGTGGCAATATGGGAAACTAAGACTACAGTGGAAAAGCTTACTTTCAGCCCAGGAGGAAAGGTCCAAATTCACCCATAGGGTCATCTCCAGTATCAGTTCCTCTGCTGTACGTCATCCTCATGCCACTGGTTCCCATCAAACCAACATGACATCCACTGCACTTGACAAGGACCTGGAGCGGATTCAAGCGCTGAATGAAATTCTGGAGGCGTATCTGGATTGGAAACTCCACGAGCCTTTATTCTGGTGCTGGATGGACAGTGTGATGGACAGCTCCCTTACTGATGCGTCCGAGGTGAAGCCAGCCGTTTGGCCACCAGGGGGGCAGACTGTCACGGCGACGTGTCCCCATGGCGACAAGACCAGGAGAGCAGTCAGACAACTTGACAAGATGTTGCTAAGGCTGCAGACAGAACTGAGAGCCAGAAGAATAGAGCAGGCCACACTCGCGCTCGCCTCACAGGGGGGACATCAGGGGGCTTCTCGGCTTTCTGACAGGCAGAGAATGGAGGTGGAGAAGACGGTTGCGGGTTATTTAGAGGGTCTGCGTCTTAGTAACACCTCCGCGATCACATCAAAAGGCTTTGTGCCATGTCTCCAGGATCCACAGCCCACAAAGCCACCTCGCAGGTTCCACAGTGCAGAACCTGGCCTGGCAGTGACAGCTGGGAAGCTCCAGGCATCTACGGTTTTGGGCGAGCTGAGGGAGAGAGAGGCTGTTCTGCAATGGCAGCTGGAGCGATTGAGGCAAAGTATGAGAGTGGAATTGCAAAGACAGGCCAGCACAATGGAGGGGGTGATCCTCATCCCGCCAATTAAGAGATAAACAGACTTTTTAGGCCACTATATATGGACTGGGACTTAAAGCTTCATTTTGAAAGGCTAAATAAGTGAAGTCTGTTTTCGTGCATTTTCTGATGAACTATCGAgatggttcaccccaaaatgagaTGAGGGACCCCCCCATACCGTGTTAACTCTGTGTGCCTTTGTTCCTTTTTGCACGATTAAAggatataataaaacaaaatgtcctGCTTTTAAGCTTGTGTGAATACAGGttgtccgtggggtcttaaagtcttaaaatatctt
>TCONS_00024113
GCCGAGATCTGCTGTTGGCGCTTGGCTGgctgctggcatcgggaaatctgCTGGACTTCCTGCTGGCAGAGAAGGTTTATCAGTTAGACACGCTCTCTTCTGCACCAACGATCCCCCAGGGTCCAATTAGTGGGCTGGATGATCTAATGGCATGTGGATCAGGTGAGGAACTCACGGTGAAGAAGGATCAAGAAATTCAGGCACTGCAGTGGCAATATGGGAAACTAAGACTACAGTGGAAAAGCTTACTTTCAGCCCAGGAGGAAAGGTCCAAATTCACCCATAGGGTCATCTCCAGTATCAGTTCCTCTGCTGTACGTCATCCTCATGCCACTGGTTCCCATCAAACCAACATGACATCCACTGCACTTGACAAGGTGACATGAAAACGCTGGAGCATTTTAATGAAATATGGACACCAGAACATATTCTCTCCAGAGATTTCTCATCGCATTTGTATTCCTTCGGTGTGGGTTAAGTGCTTCTATCCGTCATCAGCGCATATGGTGATCAGCGCTCGATAATAACTGCCGTAAGCTAGGACCTGGAGCGGATTCAAGCGCTGAATGAAATTCTGGAGGCGTATCTGGATTGGAAACTCCACGAGCCTTTATTCTGGTGCTGGATGGACAGTGTGATGGACAGCTCCCTTACTGATGCGTCCGAGGTGAAGCCAGCCGTTTGGCCACCAGGGGGGCAGACTGTCACGGCGACGTGTCCCCATGGCGACAAGACCAGGAGAGCAGTCAGACAACTTGACAAGATGTTGCTAAGGCTGCAGACAGAACTGAGAGCCAGAAGAATAGAGCAGGCCACACTCGCGCTCGCCTCACAGG
>TCONS_00024114
AACATCAAAAACCTCAATGGACTCGAGGCAGTGGGTGATACTCTGGAGGAGCTGTGGATCTCTTATAACCTCATAGAAAAACTGAAGGGAATTCATGTCATGAAGAAACTTAAAGTCTTATACATGTCCAACAACTTGGTGAAGGAGTGGGGGGAGTTTCTGAAACTGGCAGATCTTCCATCACTGGTTGACCTTGTCTTTGTGGGAAACCCATTAGAAGAAAAATATTCTGCAGATGGCAACTGGATAGAGGAGGCTACAAAGAGACTTCCCAAACTCAAAAAGCTAGATGTGCTGTGCTTGCAGACACACAGCTGCTGTTTGTGAGGAGTGCTCTGTGTTACTGTGGCTATGGGGCTCCTTGGGTGGTGGAGCCCAGGCCCACGAGTCACATAGAGGAGATGGAGAGCCGAGATCTGCTGTTGGCGCTTGGCTGgctgctggcatcgggaaatctgCTGGACTTCCTGCTGGCAGAGAAGGTTTATCAGTTAGACACGCTCTCTTCTGCACCAACGATCCCCCAGGGTCCAATTAGTGGGCTGGATGATCTAATGGCATGTGGATCAGGTGAGGAACTCACGGTGAAGAAGGATCAAGAAATTCAGGCACTGCAGTGGCAATATGGGAAACTAAGACTACAGTGGAAAAGCTTACTTTCAGCCCAGGAGGAAAGGTCCAAATTCACCCATAGGGTCATCTCCAGTATCAGTTCCTCTGCTGTACGTCATCCTCATGCCACTGGTTCCCATCAAACCAACATGACATCCACTGCACTTGACAAGGTGACATGAAAACGCTGGAGCATTTTAATGAAATATGGA
>TCONS_00024115
AGTTCCATAGCAACCGCAAAGAACAACATGGCAAAAGCAACAACTATTAAAGAGGCCCTGGTGAAATGGgaGGAAAAAACTGGTGAAAAAGCAAATGATGCCACGGCAGTAAAGCTTTATGGTCAAATCCCTCCCATTGAAAAAATGGATGCATCTCTCTCTAATCTTGTCAACTGCGAGAGATTGTCCTTGTCTACAAACTGCATTGAAAAAATTGCCAACTTAAATGGTCTAAAAAACCTTAAGATATTGTCCTTGGGGCGGAATAACATCAAAAACCTCAATGGACTCGAGGCAGTGGGTGATACTCTGGAGGAGCTGTGGATCTCTTATAACCTCATAGAAAAACTGAAGGGAATTCATGTCATGAAGAAACTTAAAGTCTTATACATGTCCAACAACTTGGTGAAGGAGTGGGGGGAGTTTCTGAAACTGGCAGATCTTCCATCACTGGTTGACCTTGTCTTTGTGGGAAACCCATTAGAAGAAAAATATTCTGCAGATGGCAACTGGATAGAGGAGGCTACAAAGAGACTTCCCAAACTCAAAAAGCTAGATGggAATCCTGTCATCAAACAAGAGGAGGAAACTGAAGGGGAGagttaaatcaatttatttagaATATTCTAAAGTTGGTGCATTTTTATTCTTCAAACACCagcattttaactatttaaaatatgtgcaATATTTGCATTTtctatgtgtatttatatggaattaaGCTAAAGATCAATTTTTTTGAGATTCAACACTGTTTGAGTATATTTGAAAAGCACACTTGAGGCCATTTTGTTAGCTTTAGCACAAGTAGAGACATATACAATCATTTAATTCATGCAGCAGTACTGATTGAATAGTACTAatttcttacactgtaaaaactgtcaTTGTCATTTAAACCAATATTTGTACTCCATATTACCATTTAAAAGAACTTGATTCAACCTTTTGACTTGAATAATCACAAAATCTAAATGTTGCCATATGAAGTAAACATTAGAAGGTAAAGACAAAGCATTCTTACTTTGTACATTCTTCAGGGTGACCAATAacatgttaaattgcacacaggaaaaataaaaaagatttatgcATTAAGTGTAAGTCACACTGTAGGCTTGAACTGTTTCTTTTTAGTGGTGTTATGTTTTAGTATTTCTCTTGTTGGAGTCTGCTTACAACAAAACTACATTAATGACTTCAAAAAAGGACTGTTTTAATTATATGCATTTGCTTTTTTGTATTTCCCGCTAAAATATTTGAACATaagcaaaaaaatgtaatgtatatgcagGTTATTCAATTTCCATACAgtttaataatgtgttttatCACACTAATGTACTTTGTATGTGGACGTTGCACAACGAAAACAATTTAACACTTTGTAGCACGAGTAACTTGAGTTTACTATAGCCAAAGGCACCATAGTAATACTGTAATTAAAAGATTTTGGAATCTTTTCCTGTAAACAAATTTATAAGCATGATTACATTTTGTATGCTAagcatgttttaatgtttgttcAACCTGTCTACTACATTAAAACTTTGTTCTTGTTGTTTACTGTGTTTCACATAAGAAAATAAACTATTTTGTCCTCTATGCACAA
>TCONS_00024116
ATGGCAAAAGCAACAACTATTAAAGAGGCCCTGGTGAAATGGgaGGAAAAAACTGGTGAAAAAGCAAATGATGCCACGGCAGTAAAGCTTTATGGTCAAATCCCTCCCATTGAAAAAATGGATGCATCTCTCTCTAATCTTGTCAACTGCGAGAGATTGTCCTTGTCTACAAACTGCATTGAAAAAATTGCCAACTTAAATGGTCTAAAAAACCTTAAGATATTGTCCTTGGGGCGGAATAACATCAAAAACCTCAATGGACTCGAGGCAGTGGGTGATACTCTGGAGGAGCTGTGGATCTCTTATAACCTCATAGAAAAACTGAAGGGAATTCATGTCATGAAGAAACTTAAAGTCTTATACATGTCCAACAACTTGGTGAAGGAGTGGGGGGAGTTTCTGAAACTGGCAGATCTTCCATCACTGGTTGACCTTGTCTTTGTGGGAAACCCATTAGAAGAAAAATATTCTGCAGATGGCAACTGGATAGAGGAGGCTACAAAGAGACTTCCCAAACTCAAAAAGCTAGATGggAATCCTGTCATCAAACAAGAGGAGGAAACTGAAGGGGAGagttaa

Function

symbol description
si:dkey-84k17.2 Orthologous to human TEDC1 (tubulin epsilon and delta complex 1).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-178 Predicted to enable alpha-tubulin binding activity and dynein heavy chain binding activity. Predicted to be involved in outer dynein arm assembly. Predicted to be located in cell projection and microtubule. Predicted to be part of dynein complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 16. Orthologous to human DNAL1 (dynein axonemal light chain 1).
ZDB-GENE-131121-397 Orthologous to human TEDC1 (tubulin epsilon and delta complex 1).

Ensembl:

ensembl_id ENSDARG00000034042 ENSDARG00000091366 ENSDARG00000097505

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024112 False 1798 mRNA 0.49 8 33688220 33707589
TCONS_00024113 False 836 nonsense_mediated_decay 0.51 6 33691698 33705464
TCONS_00024114 False 824 nonsense_mediated_decay 0.48 6 33699379 33713177
TCONS_00024115 False 1615 mRNA 0.34 8 33708682 33716688
TCONS_00024116 True 579 mRNA 0.41 8 33709691 33714636

Neighbor

gene id symbol gene type direction distance location
XLOC_012235 NA coding downstream 116414 33564882 ~ 33571806 (-)
XLOC_012234 tmem121aa coding downstream 135857 33501766 ~ 33552363 (-)
XLOC_012233 CR628327.1 coding downstream 227327 33418262 ~ 33460893 (-)
XLOC_012232 ccdc28a coding downstream 272200 33388899 ~ 33416020 (-)
XLOC_012231 efr3ba coding downstream 398871 33232748 ~ 33289349 (-)
XLOC_012237 NA coding upstream 944710 34661398 ~ 34691556 (-)
XLOC_012238 NA coding upstream 990091 34706779 ~ 34805758 (-)
XLOC_012239 kidins220a coding upstream 1092955 34809643 ~ 34963575 (-)
XLOC_012240 mboat2a coding upstream 1252435 34969123 ~ 35076730 (-)
XLOC_012241 itgb1bp1 coding upstream 1508926 35225614 ~ 35238359 (-)
XLOC_012230 AL590149.1 non-coding downstream 456506 33206780 ~ 33231714 (-)
XLOC_012229 NA non-coding downstream 525742 33145594 ~ 33162478 (-)
XLOC_012228 NA non-coding downstream 549844 33133819 ~ 33138376 (-)
XLOC_012245 BX255944.2 non-coding upstream 1837883 35554571 ~ 35846256 (-)
XLOC_012246 BX255944.1 non-coding upstream 1901298 35617986 ~ 35618104 (-)
XLOC_012248 AL929378.2 non-coding upstream 2184377 35901065 ~ 36340579 (-)

Expression


Co-expression Network