G395598


Basic Information

Item Value
gene id G395598
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000228
NCBI id null
chromosome length 640563
location 77394 ~ 88247 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU453347
GGAATACTAACACAGTGACCGTCTGTCCTTCAGAACTGGCTTCCATTAACACAAATCTGAGGGTTTTCCAAAAGTTGGGTCGGCTCGGGACACTCTCCCTTTAGCCCGGTAATACTTCACGCTTAGCAGACGTCTGGATCTGTTCATTTACACGGCAAGTGTGATGATGGCCCAATGAAAACCTTTCCACCAGTCTAACAGGTTTAAAGTCACAAATGCAATGGCGCCATCAAGTGGCACAACCAAGTATTTCTCTGAAAACAATACACAAACTATATAATAATAATAATAATAATAATAATACAGTCCTCTAGCTTCCGATCATTGGACCAGCCAGTAACCTGATGGATCTGAAACACTTTTCTTTTTCAACAAATCTACTCAGTTGGCACTGGACTACACTAGCTTCCGTCCGATACTGAAAGATGGTCAATACAATAAAGAAACCTGCGTTTTCATACTTGACGTATTCCCTTGCGAGCTCGCTGAAGTCAGCAGTGCAATAGTGCCACGCCGGATAAATAAATAAATGTAAACAAATGACCGAATTCACAAGCGCGGAGCAAGAGTCGTCACGCTGATGGGCTGGTGATCCATTTGCAAAAGGTTGACCAAAAAAAGATGTTTGGTTGAGGGGGGGACGAGATCTTTCGGTTCCACCAACGAGGTCCCATAAGAAGGCACTGATTATCTGTAGTTGGTGAATTACGCCGCTGGACTGTGTTTGTACCACGAGGAAGAACTGAACAGCTTCGGTCCGTCCTAAAGGATCAGGAGTTGTCCGATCCTGACATACTGACCGAAATCGTTTTGCGTCAGAATTGAGTCGCATGGTTTCTGGGACGTTTTTTTTACATTGCGTTACATTCTTGTCATATTAGATGGTAACATTCTTGAGTAAAACTCTCCTTGCCTCTGATATATGGGGTAGAGCACCTGGGACGACGGATCTCACACCTGCCCTGCTTCACCCCCCCTCCAAAAACAACAAAAACAGTGAAAATCAAGGCCGAAATCCGGGAGGCCTGTCTCTGAATGGACTGAGGGAAGATACTCACCAACTTCTGTGAGGTTTCTAGACATTTACAAGAGAAAAGAAACGGCAGTTTCCTACTCGACGTGTGATGTCCCTTAAAAGTCTTCTTTTTTGTCTTTTGTATTTTTACTACAACAAATACAGTCACACAATACAATATCCTTCTGACCAGGCAAGAAGCTGTAGTAATAGAAGACGAAAAAACCAAAACAAAAAAGCAATTTGAGCCACAGACATGCCAAAGATGAATCTGAATCTGGGCCTATGGAGGAAAAAAACAACCAGAGAAGACCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGTGTGTGTGTGTGGTGGGAAACAAGCATTCATTTTTTCAGGGGCTGGTAAACGGACGCGTTGGGGTCCAGTCCGGACGGGCTGGTGTCCATGAACTTGGAGGAGTAGTGGGGCGTGACGGGGGTCATGCTGCCTGTATCTGAGGAATACACCACACTGGGCATGACGGCCATCACCTCGGCTATCTTCTGCTTCAGGTCTTTAATTTCCTGGTCTTTCTGCAGAATCTGACCTTGTGCGATCTCCAGCTGTCTCTTAGCGTCTCCGAGGGCAGAGAAGAGGTCCAGCTTAATTCGGGTCTCAGCACTGAGGCTGTTTTCCAGGTGCTGGGTTTTATCCTGCATCGCTGACAGCGCTGACATCAGAACCTCTGTGTCCTTCTCGCTCTCCTTATATTTATGTAGTTCTTGAACTTTGAGCTCCAGCTCTCTGATTTGATCCTCTTTCACCTTGATGTCAAGCGTGAGTTTCTTACACTCTGTCTCCAGCTCAGAAATCCTCCTCCTCAGAGACTCTGTGCACTCACCCCTGGTTGCAGCAGCGAGAGCGACAGCACGGGCCGCCGTGGCCTCCTCCAGCTTCTTGCGTTTCTTTTCCTCTGCTAACAGTTTCTCTGCTGCAGCACGAGCGTCCTGTTCTGCCTTCAGACGCTTCTCCAGCTGCCCCACTGTCTGCTTGTCCTTCTGCTTCGCCTGCACAGCGTTGTGAAGTTTGTTTTGCAGCAGTTCGTTCTCCTGACGCAGCTGACCGAGCTCGGAGCGTATGCTGCGTTCAGAGCTGCCCAGAGAGCCCAGCTGACTGCGCAGATCCTGTTCGGTCTGTCTGCTCGCCTGCAGATCTGCCTTCAGCTTCTTAACGTCCTGCTCCAGCCTGACGAGCGCCTCGGGTTTGCTCAGCTGATTGTTGGGAATGCAGTTTTCCACAGGGTCTCTGTGCGACGTTGCGTTCTTCCCTCCTCCACACTTCTGTTTTCTGTCCCCCTTACTCGAGGAAGAGGACGAAGGCCCGGAGGAAGACGGCACGCTGCCGTTGGCTGTTCCGTGTCCCCGGGGCGAGGAGCTCCCTCCTCCTCCGCTGGCATTTTTGTAATTTTTGTTGGAGTTGGAGGAGGACGAAGAGGAGGAGGATGAAGAGTGTTCATCTTTCAGCAGATTCTCAGTGCTGCCCAGCAGATCTGAGCTGCTCAGTCTCTTACTGTTCACATGGTTCTCCATGTACTCCATCTCCTGAGCTTTACTGTCTACTGACGGTAAGATGCTGCTGCTGGTGCTGCTGTGATGGTTCTGGTTGTGGTTGTGTTGCTTTTTGGACTCGTTCTTGCCTCGTTCTTTCTCTCTGTATTCCAGCTCTGGTAACGTGTTGGACGAGGGCTTTTTACCGCCCGCCGAGCCGTTCTGTGCCACGGCTGGAGAGTCTACATCTTGAATGCCTTTAGATGCTGCTGCCTCCTCTGCTTCTCTCTCTTGTCTCTGTATGAGCTGTTGTTCTGGAGGAAGTGCCTGCTGCAGCAGCTGCATGTAAAATTCGTTCTCTTTCTGCACTTCTTTCTGTTTCCGCAAACGCATCTTATAACTTACATAACTCTTAAAACCAAAGCCCAGCGTCACCACCGGGTACCCG

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU453347 True 2982 lncRNA 0.49 7 77394 88247

Neighbor

gene id symbol gene type direction distance location
CI01000228_00043461_00055521 NA coding downstream 20119 42481 ~ 57275 (-)
CI01000228_00030868_00037938 UBE2D4, UBE2D2, UBE2D3, UBE2D1, UBE2D2L, UBE2D1B coding downstream 39447 30340 ~ 37947 (-)
CI01000228_00017667_00028066 MANBA coding downstream 48850 17667 ~ 28544 (-)
CI01000228_00010653_00014937 NA coding downstream 62457 10480 ~ 14937 (-)
CI01000228_00002917_00006024 NA coding downstream 71262 1447 ~ 6132 (-)
CI01000228_00432311_00436091 NA coding upstream 343795 432042 ~ 436154 (-)
CI01000228_00450070_00487878 NA coding upstream 361805 450052 ~ 487878 (-)
CI01000228_00583846_00597205 NA coding upstream 494346 582593 ~ 597757 (-)
CI01000228_00600604_00621150 NA coding upstream 512307 600554 ~ 621150 (-)
G395618 NA non-coding downstream 9285 67762 ~ 68109 (-)
G395622 NA non-coding upstream 783 89030 ~ 89263 (-)
G395624 NA non-coding upstream 2240 90487 ~ 90752 (-)
G395641 NA non-coding upstream 39022 127269 ~ 131260 (-)
G395664 NA non-coding upstream 85338 173585 ~ 178953 (-)
G395703 NA non-coding upstream 222584 310831 ~ 312191 (-)
G395702 NA other upstream 300126 388373 ~ 444838 (-)
G395711 NA other upstream 389795 478042 ~ 478937 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00004280 LOC105908978 coding CM030121.1 CM030121.1 41000647 ~ 41011758 (+)