XLOC_012261 (dtnbb)


Basic Information

Item Value
gene id XLOC_012261
gene name dtnbb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 37070096 ~ 37156520 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024160
CACAGCACAACAATCTGACGATGGCGGAGCGCAGCGCGAGCAAACTGCGGATTACCGAGTCGAAATTTGCCGGTGTGTATTGAAAAAGTGAactatgataatgatgatgatggtgatgatgatgatgatgctccaGGAATCGAGCGCGAGACCGATGATCGCTCTCATCAGATGCTGATGATGGTCGCGCGACCTGCGTGATTTCCTCCTGCTGGAGCATCCTGGTTCCTTTTCATCACCGTATCGAAGTCTCAGCCAACCTGACAGAATGATTGAAGAGGGAAGTAAAAGCAGCAAGTCTATGGTGGAGAAGAGACAGCTCTTCATGGAGATGAGGGCTCAAAACTTTGATGTCATTCGCCTTTCAACGTACAGGACAGCATGTAAGCTACGATTTGTCCAGAAACGCTGCAACCTTCACCTAGTGGATGTGTGGAACATGATCGAAGCTTTTCGCGACAACGGGTTGAGCACGCTAGACCACAACGCCGAGATTAACGTGTCCCGCCTGGAGACCATTTTGTCCTCAATCTTCTACCAGCTCAACAAGCGGCTGCCCACCACGCACCAGATAAACGTGGAGCAGTCCATCGGCCTGCTGCTAAACTTCATCGTGGCCACTTATGACAGTGAAGGCCATGGGAAACTCACAGTGTTTGCTATGAAGGCAATGCTAGCTACGATGTGTGGTGGTAAAATACTGGATAAATTACGTTATGTATTTTCCCAGATCTCAGACTCCAACGGGGTGATGGTCTTTGCCAAATTTGACCAGTTCCTGAGGGAGGTGTTGAAGCTCCCGACGGCAGTGTTCGAGGGGCCTTCGTTCGGCTACACTGAGCACTCCGTGAGAACATGCTTCCCTCAGCAGAAGAAGATCTTGCTGAATACGTTTTTGGATGTGTTGATGGCAGATCCACCCCCGCAGTGCCTCGTATGGCTACCTCTCATGCACCGACTCGCTAATGTAGAGAATGTCTTCCATCCAGTGGAATGTTCATACTGCCGGAGTGAGAGCATGATGGGTTTTCGGTACCGCTGCCAGCAGTGTCATGGCTACCAGCTTTGTCAGAGCTGCTTTTGGCGCGGTCATGCCAGCGGCCCTCATAGCAACCAGCACCAGATGAAGGAGCACTCATCATGGAAGTCTCCAGCAAAGAAGCTCAGCCACGCCATCAGTAAATCTCTGGGCTGCATGCCGATCGGAGAGCCTCCGCATCCTGTGTTTCCCGAGGCAGCAGAAAGACCTCAGGATCTCGCACACACTACCACTCTTGAGAGTCCCAGCCGACTGGATGAAGAGCATCGTCTCATTGCTCGATATGCGGCTCGTCTGGCAGCCGAAGCCAGCAACTCCACTCAATGCCCTCCGTCTGATCTAAGCTTCAACTTTGATGCTAATAAGCAGCAGCGGCAACTCATTGCAGAGCTGGAGAATAAAAACAGGGAGATCCTGCAGGAGATCCAGCGTTTGCGTCTGGAACATGAACAGGCTTCTCAACCGACCCCTGAAAAAGCCCAGCAGAACCCAACACTTCTGGCAGAGCTACGACTGCTGCGGCACAGAAAAGATGAGCTGGAGAGGCGCATGTCAGCTCTGCAGGAGAGCAGGAGAGAGCTGATGGTCCAGCTGGAGGGCCTCATGAGGCTCCTGAAGGCTCAGACGGGGACCTCGCCACACTCATCGCCCAGCCACAGTGCCAGCTGCACCATGCCTATGCCCATCCGCTCCACCTCGGCCGGCTCAACCCCCACACACACGCCGCAGGACTGTCTGGCAGGGGTTGGAGACGACGTGCTGGATGCCTTCTCTCAGGGTGTACCAAGAAATCTCCGTAATGATCTTTTAGTGGCTGCAGACTCGATCACAAACACTATGTCATCACTAGTGAAAGAACTTCACTCAgTGGATGACGGGCTTGAGGAAGAGGAAGAGAACATGCGAAATGGACGGGAGAAGACTGAGTCAGAGTAAAAGAATATAGAATGTTTCATTGTCATCGCTGAAGCATTCTGGGAAAAGGCACTCCACCCCTTCATTCTGAGCCCCAGGAAAGGACCAGCGACTTCAAGAAGGAAAAAATCTCCCTGGCATTCGCACATTGACAAATGCATGCTCTTCCCCAACTGGGTTTCACTATGTGAAACAAGCTCTTCATCACACCTTGCACAGAGCAAGTGTATTTATTAggcagtatataaatatatataaatatatataaatatagctcTATGTCTATCTGTATAAACTCATCGTCATCATCCTGTTACTCATGAGAATGGCTTGTTTGTGCTTTCTTACTCTCTAAAAACGAACGCACTGTGCATTTTCATCACGTCACTCAGATCTGATCTATGCTGTAGCTATTTTTCCCCACGCTGGGagcatttttttgtttggttttgtataGCTAGtgtaatttttgttgtgttttaatgcATGGAGTGGCTCTGCTGGATTGGTGGAGAGGC
>TCONS_00024161
ATGATTGAAGAGGGAAGTAAAAGCAGCAAGTCTATGGTGGAGAAGAGACAGCTCTTCATGGAGATGAGGGCTCAAAACTTTGATGTCATTCGCCTTTCAACGTACAGGACAGCATGTAAGCTACGATTTGTCCAGAAACGCTGCAACCTTCACCTAGTGGATGTGTGGAACATGATCGAAGCTTTTCGCGACAACGGGTTGAGCACGCTAGACCACAACGCCGAGATTAACGTGTCCCGCCTGGAGACCATTTTGTCCTCAATCTTCTACCAGCTCAACAAGCGGCTGCCCACCACGCACCAGATAAACGTGGAGCAGTCCATCGGCCTGCTGCTAAACTTCATCGTGGCCACTTATGACAGTGAAGGCCATGGGAAACTCACAGTGTTTGCTATGAAGGCAATGCTAGCTACGATGTGTGGTGGTAAAATACTGGATAAATTACGTTATGTATTTTCCCAGATCTCAGACTCCAACGGGGTGATGGTCTTTGCCAAATTTGACCAGTTCCTGAGGGAGGTGTTGAAGCTCCCGACGGCAGTGTTCGAGGGGCCTTCGTTCGGCTACACTGAGCACTCCGTGAGAACATGCTTCCCTCAGCAGAAGAAGATCTTGCTGAATACGTTTTTGGATGTGTTGATGGCAGATCCACCCCCGCAGTGCCTCGTATGGCTACCTCTCATGCACCGACTCGCTAATGTAGAGAATGTCTTCCATCCAGTGGAATGTTCATACTGCCGGAGTGAGAGCATGATGGGTTTTCGGTACCGCTGCCAGCAGTGTCATGGCTACCAGCTTTGTCAGAGCTGCTTTTGGCGCGGTCATGCCAGCGGCCCTCATAGCAACCAGCACCAGATGAAGGAGCACTCATCATGGAAGTCTCCAGCAAAGAAGCTCAGCCACGCCATCAGTAAATCTCTGGGCTGCATGCCGATCGGAGAGCCTCCGCATCCTGTGTTTCCCGAGGCAGCAGAAAGACCTCAGGATCTCGCACACACTACCACTCTTGAGAGTCCCAGCCGACTGGATGAAGAGCATCGTCTCATTGCTCGATATGCGGCTCGTCTGGCAGCCGAAGCCAGCAACTCCACTCAATGCCCTCCGTCTGATCTAAGCTTCAACTTTGATGCTAATAAGCAGCAGCGGCAACTCATTGCAGAGCTGGAGAATAAAAACAGGGAGATCCTGCAGGAGATCCAGCGTTTGCGTCTGGAACATGAACAGGCTTCTCAACCGACCCCTGAAAAAGCCCAGCAGAACCCAACACTTCTGGCAGAGCTACGACTGCTGCGGCACAGAAAAGATGAGCTGGAGAGGCGCATGTCAGCTCTGCAGGAGAGCAGGAGAGAGCTGATGGTCCAGCTGGAGGGCCTCATGAGGCTCCTGAAGGCTCAGACGGGGACCTCGCCACACTCATCGCCCAGCCACAGTGCCAGCTGCACCATGCCTATGCCCATCCGCTCCACCTCGGCCGGCTCAACCCCCACACACACGCCGCAGGACTGTCTGGCAGGGGTTGGAGACGACGTGCTGGATGCCTTCTCTCAGGGTGTACCAAGAAATCTCCGTAATGATCTTTTAGTGGCTGCAGACTCGATCACAAACACTATGTCATCACTAGTGAAAGAACTTCACTCAgTGGATGACGGGCTTGAGGAAGAGGAAGAGAACATGCGAAATGGACGGGAGAAGAGTGAGTCGCAA

Function

symbol description
dtnbb Predicted to enable zinc ion binding activity. Predicted to be involved in synaptic signaling. Predicted to be located in cytoplasm. Predicted to be active in plasma membrane and synapse. Is expressed in notochord; pronephric duct; and somite. Orthologous to human DTNB (dystrobrevin beta).

GO:

id name namespace
GO:0099536 synaptic signaling biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070117-3 Predicted to enable zinc ion binding activity. Predicted to be involved in synaptic signaling. Predicted to be located in cytoplasm. Predicted to be active in plasma membrane and synapse. Is expressed in notochord; pronephric duct; and somite. Orthologous to human DTNB (dystrobrevin beta).

Ensembl:

ensembl_id ENSDARG00000013020

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024160 False 2472 mRNA 0.50 19 37070096 37156520
TCONS_00024161 True 1704 mRNA 0.53 15 37073344 37152178

Neighbor

gene id symbol gene type direction distance location
XLOC_012259 dnmt3ab coding downstream 15137 36936918 ~ 37054959 (-)
XLOC_012260 BX571720.1 coding downstream 119541 36950438 ~ 36950555 (-)
XLOC_012257 dpysl5a coding downstream 133240 36898874 ~ 36936856 (-)
XLOC_012258 BX571720.2 coding downstream 165258 36901790 ~ 36904838 (-)
XLOC_012256 mapre3a coding downstream 173536 36867281 ~ 36896560 (-)
XLOC_012262 asxl2 coding upstream 6051 37162571 ~ 37195354 (-)
XLOC_012263 kif3cb coding upstream 47709 37204229 ~ 37214196 (-)
XLOC_012264 ptgr2 coding upstream 131332 37287852 ~ 37299394 (-)
XLOC_012265 CR382330.1 coding upstream 152809 37309329 ~ 37309446 (-)
XLOC_012266 si:ch211-180n24.3 coding upstream 154142 37310662 ~ 37312922 (-)
XLOC_012253 BX649242.1 non-coding downstream 394219 36673484 ~ 36675877 (-)
XLOC_012252 CR354585.1 non-coding downstream 434907 36635072 ~ 36635189 (-)
XLOC_012250 NA non-coding downstream 556160 36482587 ~ 36513936 (-)
XLOC_012249 NA non-coding downstream 593362 36446514 ~ 36476734 (-)
XLOC_012267 NA non-coding upstream 206504 37363024 ~ 37365357 (-)
XLOC_012269 CR382330.2 non-coding upstream 233483 37390003 ~ 37390117 (-)
XLOC_012271 NA non-coding upstream 612121 37768641 ~ 37771340 (-)
XLOC_012273 NA non-coding upstream 866623 38023143 ~ 38026611 (-)

Expression


Co-expression Network