XLOC_012264 (ptgr2)


Basic Information

Item Value
gene id XLOC_012264
gene name ptgr2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 37287852 ~ 37299394 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024166
ACTTCAGGAAGAAACACTCTTTCTGCAAGCAAGGGAGTTGCTTTGTAAATATTTGCAAGTCCTGCacagacatttattttttatataaaaagcgttaataaaaaagagaaaatgttaaatgtaacaaGAGTTGTGTTAAGCTCCCGACCAGGCAACAGTGGTCAACCAGTTAAAGAGAATTTCCGTGTAGAGGAGACCACGACATCATCAGAGCTGAAGGAAGGACAAGTGTTGGTTCGGACTCTTTATCTCTCAGTTGACCCTTACATGCGCTGTCGCATGAACGACGATACTGGAGCTGACTACCTGTTGCCATGGAGATTGGAGGAGTGTGTGGATGGAGGAGGAGTTGGTGTAGTTGAAGCCAGCAAGAATCCGGATTTATCTGTGGGCACCATCGTCACCTCCTTCAACTGGCATTGGCAAACCTACGATGTGATGGATGGCAGCCTTTTGCAAAAGGTCGACCCAGGGATGGTGGATGGTCATGTGTCGTATTTTCTTGGTGCAGTGGGCATGCCTGGCCTTACTGCGTTTTTTGGGGTGAGAGAGAAGGGTCATGTGACTGCAGGTGCCCAGCAGACGATGGTCGTGAGCGGAGCAGCCGGAGCTTGTGGGTCAGTTGCTGGACAGATTGGCCGATTGGATGGTTGTAAGACAGTCGTGGGGATTTGCGGCTCTGACCAAAAATGTCAGACCTTGGTAAAAGAGCTGGGATTTACAGCAGGGATAAACTACAGAAACGGAGACGTCAGCTCAGCGCTGAGAGAGCATTGCCCCAGAGGCATTGATATTTACTTTGACAATGTAGGCGGCCCCATCAGCGATGCTGTTATATCACAGATGAATCCCGGTGCTCATGTGATCCTGTGCGGCCAAATCTCGCAGTACAACAAGGATGTGCCTTACCCTCCTCCTTTAAGTCAAGATACCCAAGAAGCTTTGCGTCGTAACAACATCACAAGGGAGAGATTTATTGTGTTGAACTACATGGAGAAACATGCAGAAGGCCTCATGCAGCTCAGCCACTGGGTAAAAACAGGCCAGATAAAGGTGTTGGAAACTGTTGTGAATGGCATCCAAAACATGGGAGAAGCGTTCTGCTCCATGATGACCGGAGGCAATATCGGTAAACAAGTTGTCAAAATTTCAGACTGAGTCAGACGTCTGCAGCAAGAGGCCTTCTGGAGGTGGTCTGCTGTTAAACCTGAAAGTCTATGAGAAAGGAGTCCTTCGAAAAGACACATGAAGTTCCTCCTGTgggactgtccctttaagtgtgcTAGAGGTAACTGTGGATAAAGACAACAGATT
>TCONS_00024167
ACACTCTTTCTGCAAGCAAGGGAGTTGCTTTGTAAATATTTGCAAGTCCTGCacagacatttattttttatataaaaagcgttaataaaaaagagaaaatgttaaatgtaacaaGAGTTGTGTTAAGCTCCCGACCAGGCAACAGTGGTCAACCAGTTAAAGAGAATTTCCGTGTAGAGGAGACCACGACATCATCAGAGCTGAAGGAAGGACAAGTGTTGGTTCGGACTCTTTATCTCTCAGTTGACCCTTACATGCGCTGTCGCATGAACGACGATACTGGAGCTGACTACCTGTTGCCATGGAGATTGGAGGAGTGTGTGGATGGAGGAGGAGTTGGTGTAGTTGAAGCCAGCAAGAATCCGGATTTATCTGTGGGCACCATCGTCACCTCCTTCAACTGGCATTGGCAAACCTACGATGTGATGGATGGCAGCCTTTTGCAAAAGGTCTGATGGTCATTTTGGACAGTTTGAGCCAATGTAGAGTGTGTTTGGATCTCAGGTGTGCTGTTCTTGCAGGTCGACCCAGGGATGGTGGATGGTCATGTGTCGTATTTTCTTGGTGCAGTGGGCATGCCTGGCCTTACTGCGTTTTTTGGGGTGAGAGAGAAGGGTCATGTGACTGCAGGTGCCCAGCAGACGATGGTCGTGAGCGGAGCAGCCGGAGCTTGTGGGTCAGTTGCTGGACAGATTGGCCGATTGGATGGTTGTAAGACAGTCGTGGGGATTTGCGGCTCTGACCAAAAATGTCAGACCTTGGTAAAAGAGCTGGGATTTACAGCAGGGATAAACT

Function

symbol description
ptgr2 Predicted to enable 15-oxoprostaglandin 13-oxidase activity. Predicted to be involved in prostaglandin metabolic process. Predicted to be located in cytoplasm. Is expressed in nervous system; optic vesicle; proneural cluster; and somite. Orthologous to human PTGR2 (prostaglandin reductase 2).

GO:

id name namespace
GO:0006693 prostaglandin metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005575 cellular_component cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0047522 15-oxoprostaglandin 13-oxidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050506-71 Predicted to enable 15-oxoprostaglandin 13-oxidase activity. Predicted to be involved in prostaglandin metabolic process. Predicted to be located in cytoplasm. Is expressed in nervous system; optic vesicle; proneural cluster; and somite. Orthologous to human PTGR2 (prostaglandin reductase 2).

Ensembl:

ensembl_id ENSDARG00000070673

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024166 False 1314 mRNA 0.47 9 37287852 37299394
TCONS_00024167 True 795 lncRNA 0.48 4 37291455 37299381

Neighbor

gene id symbol gene type direction distance location
XLOC_012263 kif3cb coding downstream 73656 37204229 ~ 37214196 (-)
XLOC_012262 asxl2 coding downstream 92498 37162571 ~ 37195354 (-)
XLOC_012261 dtnbb coding downstream 131332 37070096 ~ 37156520 (-)
XLOC_012259 dnmt3ab coding downstream 232893 36936918 ~ 37054959 (-)
XLOC_012260 BX571720.1 coding downstream 337297 36950438 ~ 36950555 (-)
XLOC_012265 CR382330.1 coding upstream 9935 37309329 ~ 37309446 (-)
XLOC_012266 si:ch211-180n24.3 coding upstream 11268 37310662 ~ 37312922 (-)
XLOC_012267 NA coding upstream 63630 37363024 ~ 37365357 (-)
XLOC_012268 crip1 coding upstream 86417 37385811 ~ 37395496 (-)
XLOC_012269 CR382330.2 coding upstream 90609 37390003 ~ 37390117 (-)
XLOC_012253 BX649242.1 non-coding downstream 611975 36673484 ~ 36675877 (-)
XLOC_012252 CR354585.1 non-coding downstream 652663 36635072 ~ 36635189 (-)
XLOC_012250 NA non-coding downstream 773916 36482587 ~ 36513936 (-)
XLOC_012249 NA non-coding downstream 811118 36446514 ~ 36476734 (-)
XLOC_012271 NA non-coding upstream 469247 37768641 ~ 37771340 (-)
XLOC_012273 NA non-coding upstream 723749 38023143 ~ 38026611 (-)

Expression


Co-expression Network