XLOC_012270 (crip2)


Basic Information

Item Value
gene id XLOC_012270
gene name crip2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 37445525 ~ 37474689 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024175
TGCAAATCAGGAGCGACGCTTTGAGCAGGATGCGCTCCCGCTCTCAGCCATTCATTGGTCGGCTTGCGCGCGTGAAAGACAAACCTGACGCTGAGTGAGTGAGAGGGGATCCCGTTTGAATTCAAATACAAGGCTTCACGATGGCTTCAAAGTGTCCCAAATGCGAAAAGACAGTTTATTTTGCTGAGAAAGTGTCATCACTGGGGAAGGATTGGCACAAGTTCTGTCTGAAGTGCGAGCGCTGCAGTAAGACCCTGACGGCAGGTGGCCATGCCGAGCATGATGGGAAACCGTACTGCCACAAGCCATGCTATGCTGCCCTCTTTGGGCCAAAAGGTGTGAACATCGGTGGAGCAGGTTCTTATGTGTACGAAGCTCCCACAAACACTTCCCCACCACCAAACAACGGAGACTCTGCGCCCAAAGCTCAGGAGAAATGGGTCCCAGTGTCTTCAAGGCCACCTTCGAAAGCTGGAAGCATCACCACCTTCTCTGGGGAAGCCAACCTGTGCCCCAGATGCAGCAAGAAGGTCTATTTCGCTGAGAAGGTGACGTCTCTGGGGAAGGACTGGCATCGGCCGTGTCTCCGCTGCGAGAGGTGCAGTAAGACCCTGGCAGCAGGAAGCCACGCAGAGCATGATGGTCAGCCCTACTGCCATAAACCATGCTATGCTGTCCTCTTCGGCCCAAAAGGTGTAAACACTGGTGGTGTTGGCAGCTACATCTACGACAAGGAGCCCAACGCTGAGGCTCAGCCTTGACTTTTCTTTACCTCCTTTCttacttccttccttcttttttttttttttttgaagtccTTGGGAAGCCTGAATTTATTATAATAACAGCCACTACAAGGACCTCACGCACTTTCACATATGCCCCACTTCTTGCCTTATCACAGGTACCCTGTGCCAGCTTGGATCTTTCACAAAAATGCCGCCACGTACTACAACAAATGCCTCCAGCTCCAGCTGCACCATTGACAATCCCTCTTATTTCTCCACTTTCAAGTCCTCCACCCCAAATCCTGCATGGTTAATTCCGACCATATCATTCGATtgaatttaaaagtaatttatttaaccCTATTtagtctctttgtgtgtgtgtacaatcaTTAAATTGTTGCATACCCAAAGGAAAATCTTCCACAATACTGCATGTACAGTAGGATGTGCGTGAAATGTGTGTTCTAGTAGCCGATAAAACAACAGAAGTTCACTGAGGGAGCTTTGTTTTATGCGTCCGTTTGAATCGCCTGCCGACAGAGAGATGAATTTCACCTCAGAGGCTCTCCGTGCAGGTGCGTTCGGGAGCACATCACCATAAATCTGAGAAATATTGTCAAACCCAGATTTGCTCTTTTGGCCGTATGGAAGCATTCCTAAGTTAAACATTAAAAGGAGGTCTGCAGGACATACTGTATGCAGACTGTAAAGCCAAACGGCTaagctgttatttattttaacgGGAGGACAGAACTTGCTCCCGGTGGGCCGCTGtcttgctgagtttagctccagcttttTATTGAACGCACATGAACCGGCTAATCAAGTCTTCCAGATTACTACATACTTCCAGGCTGGTGTGTCGGGAAAGGATGGAGCTGAAAACCCACAGGAGCCCTTCAGGAGCAGGCTTGGACACCCCCTGATTTATGAGGTTGCTACAGTGCTACATTGTATAGTGCACATGGGAACAAGGGTGTTTGTGACTGGTGCTGGGTGAGCAAGTATCTGCAGCTAATGTTTTTGATGCCAATCTAGTTCTGTTACATGACACTTGGAAACGGATAAAGGAAAAGATTTGACTAAGCTTTTGTATCGTTTGTGTTTTCAGTATTTTAGACGAACCCCAGTTTCTCAAAGTGTTGAAACTGAAGTATTATGTTTCTCTTTAGTTGATTAGCGAGTAGTTTGTTCGACTTCATTCTCACTGAatgtgtatttagtttttttgctgTATCAGGCCTTTGTTCTTTTGAGAACTTTCTTATGCAGAGCCTGCATGTCAAGTCCTGCTGCTTCTGTATGTTTAATCCCATAATAAAGTTTACATAACACTTA

Function

symbol description
crip2 Predicted to enable metal ion binding activity. Acts upstream of or within heart contraction and heart development. Is expressed in several structures, including cardiovascular system; mesoderm; nervous system; neural crest; and notochord. Orthologous to human CRIP2 (cysteine rich protein 2).

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0060047 heart contraction biological_process
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2889 Predicted to enable metal ion binding activity. Acts upstream of or within heart contraction and heart development. Is expressed in several structures, including cardiovascular system; mesoderm; nervous system; neural crest; and notochord. Orthologous to human CRIP2 (cysteine rich protein 2).

Ensembl:

ensembl_id ENSDARG00000070670

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024175 True 2072 mRNA 0.46 8 37445525 37474689

Neighbor

gene id symbol gene type direction distance location
XLOC_012268 crip1 coding downstream 50029 37385811 ~ 37395496 (-)
XLOC_012269 CR382330.2 coding downstream 55408 37390003 ~ 37390117 (-)
XLOC_012267 NA coding downstream 80168 37363024 ~ 37365357 (-)
XLOC_012266 si:ch211-180n24.3 coding downstream 132603 37310662 ~ 37312922 (-)
XLOC_012265 CR382330.1 coding downstream 136079 37309329 ~ 37309446 (-)
XLOC_012271 NA coding upstream 293952 37768641 ~ 37771340 (-)
XLOC_012272 zfp36l1a coding upstream 317928 37792617 ~ 37795865 (-)
XLOC_012273 NA coding upstream 548454 38023143 ~ 38026611 (-)
XLOC_012274 pax9 coding upstream 761780 38236469 ~ 38291065 (-)
XLOC_012275 rps6ka5 coding upstream 918500 38393189 ~ 38442362 (-)
XLOC_012260 BX571720.1 non-coding downstream 494970 36950438 ~ 36950555 (-)
XLOC_012253 BX649242.1 non-coding downstream 769648 36673484 ~ 36675877 (-)
XLOC_012276 NA non-coding upstream 1237937 38712626 ~ 38714935 (-)
XLOC_012280 BX511307.1 non-coding upstream 1512607 38987296 ~ 38987415 (-)
XLOC_012281 BX571670.1 non-coding upstream 1674878 39149567 ~ 39149683 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00000068 LOC107741856,LOC107666262,LOC108425653,LOC107594708,LOC105898002,LOC105026081 coding CM030141.1 CM030141.1 1888250 ~ 1903755 (-)
tiger barb (Puntius tetrazona) crip2 crip2,LOC107594708,LOC107752734,LOC107679813,LOC107666262,LOC107741856,LOC107600859 misc NC_056715.1 CM032084.1 15083818 ~ 15099957 (-)
mexican tetra (Astyanax mexicanus) G132380 NA non-coding NC_035911.1 CM008314.1 16268864 ~ 16282370 (-)