XLOC_012290 (prph2la)


Basic Information

Item Value
gene id XLOC_012290
gene name prph2la
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 39873584 ~ 39886628 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024196
ATGGCAGTATTGCCGGTAAGATTCACCAAAACTAAAAGAGACAAGCTAGCCCAGGTCTTGTGGGTGCTCAACTGGATTTCTGTTGTAACGGGAATCATCCTCTTTAGCTTGGGCATCTTTCTGAAAGTGGAAATTTATAAGCGACAGGATCTAATGGCCGAGGGTCAACTCCAATCTGTCCCAAACATGCTGATTGTGGTGGGTCTTATAGCCTGTGTGATTAACTTTCTGGGTGGAAAGATCTGCTATGACTGTGTGGACTCCAGTAGGTTCCTGCACTGGAAGTTGGTGATGTTGCCGTACAtcatttgtatgtttttcttCACTTTGAGCGTGTTGGTGGGTGCGCTGATGTGCTACAGCATGCACAGCCAGCTGGAGGAGTCGCTAACATTAGGGTTACGTGACGCTATGCGCTACTACAAGGACACGGACACACCGGGACGCTGCTTCTTGAAGCGCACAGTAGACCTGCTGCAGATGCAGTTCCAGTGCTGTGGGAATGAGGGATTCAGAGACTGGTTTCAGATCCAGTGGGTCAGCAACCGGTACCTGGACATGTCGCAGCGGGAGGTGGTTGAtCGTCTTCGGAGCAATGTTGAAAGCAAATACTTAATGGACGGAGTTCCCTTCAGCTGCTGCAACGTCAACTCCCCTCGGCCGTGCATTCAGCACCAAATCAGCAATAACTCCGCTCACTTTAACTATGATTACCAGACGGAGGAGCTCAACCTGTGGATGAGGGGATGCCGGCAAGCTCTGCTACAGTATTACACTAACATCATGCACTCCATCGGCCTCATGGTTCTCATCATCTGGCTCTTTGAGCTGTCAGTGCTGACCGGCGTGCGTTACCTTCAGACGTCTCTGGAGAACGTGCTGCGTCAGGGGGACCCAGAATGCGAGTCTGACGGGTGGCTCCTGGAGAACAGCTTTGTGGAAACGGCTCGCTCCAATTTTAACATCATCAAACACCTCAGCAAATTCAATCAAATCAACACGGCCAGCAATAGAGATCCAAACACTGACAGACCATCTACAGCACACTATGGGCCCGACAATGTGCCTCCAAAACCTCATCCAGCAGACGGTTAA
>TCONS_00024197
CattaactcacacacacacacacacacacacacacacaaacacagacacacaccacaTCAGATTTCATTAGCAAACAATGCATTCTGATTGTTACACAAAGCCTAGGAACATTTGATGGAAAAGAAAAATCACCTTAATGAAGAAAAGATGCCATTGAAGGTTTTATAAACATGAACGGGAGCAAGTTGCGATCATGCCATGGCACAAGGACGATTGATGGGGGAAAAAATCACCAGGATGAGGGAAGGATGCCATTGAAGGTTATATAAACATGAGTGTGGATGTACATTTCATAAAATCAGTTTCACTACATTTCTAAAGGACCGTGTATGGCATCTCTAAGCAATTTGACAGATTAGACAAtccaacaaactataaaataaattcattatacTTATGGCATCCATTTCCCCTTGACATTCCTTTATTATAAACCTCTGATATCCAGTTGTTCTCACAAATCTAAATGAGGGTGCCACGTCAATACTGTTTGGCAATTGTGGATCAAGGCATTGCCATTGACAGAATCTGACTAAGTTAGCATAAGATGCTAACTGCTAAGAATAATTTGCCCATTCATGTCATCTCCCATCAACCTTGTAAACCTTCTGATTGActtacattaaaaatgtccaatttACACATGAATTAGAACTCCTATTAGTTCAATTTCAAGTGTTATTATTTGCAACTTTGAAAAAGTAGCACAGTGTCAAGAATGGCAGTATTGCCGGTAAGATTCACCAAAACTAAAAGAGACAAGCTAGCCCAGGTCTTGTGGGTGCTCAACTGGATTTCTGTTGTAACGGGAATCATCCTCTTTAGCTTGGGCATCTTTCTGAAAGTGGAAATTTATAAGCGACAGGATCTAATGGCCGAGGGTCAACTCCAATCTGTCCCAAACATGCTGATTGTGGTGGGTCTTATAGCCTGTGTGATTAACTTTCTGGGTGGAAAGATCTGCTATGACTGTGTGGACTCCAGTAGGTTCCTGCACTGGAAGTTGGTGATGTTGCCGTACAtcatttgtatgtttttcttCACTTTGAGCGTGTTGGTGGGTGCGCTGATGTGCTACAGCATGCACAGCCAGCTGGAGGAGTCGCTAACATTAGGGTTACGTGACGCTATGCGCTACTACAAGGACACGGACACACCGGGACGCTGCTTCTTGAAGCGCACAGTAGACCTGCTGCAGATGCAGTTCCAGTGCTGTGGGAATGAGGGATTCAGAGACTGGTTTCAGATCCAGTGGGTCAGCAACCGGTACCTGGACATGTCGCAGCGGGAGGTGGTTGAtCGTCTTCGGAGCAATGTTGAAAGCAAATACTTAATGGACGGAGTTCCCTTCAGCTGCTGCAACGTCAACTCCCCTCGGCCGTGCATTCAGCACCAAATCAGCAATAACTCCGCTCACTTTAACTATGATTACCAGACGGAGGAGCTCAACCTGTGGATGAGGGGATGCCGGCAAGCTCTGCTACAGTATTACACTAACATCATGCACTCCATCGGCCTCATGGTTCTCATCATCTGGCTCTTTGAGGTTGGTTGGGTTTATtgttttggcaatacatttggaaataattcagtaggaaataattatatatatatttttcaaaataactacgtatttcaataataaaaaaaagttagaaCTGTAAAACATTACCACTTTGTAATTGGAATTGCCAttacttttcacaacacttaaga

Function

symbol description
prph2la Predicted to act upstream of or within visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0007601 visual perception biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-548 Predicted to act upstream of or within visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000013134

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024196 False 1095 mRNA 0.50 3 39873584 39880725
TCONS_00024197 True 1717 mRNA 0.42 4 39877011 39886628

Neighbor

gene id symbol gene type direction distance location
XLOC_012289 NA coding downstream 7545 39864881 ~ 39866039 (-)
XLOC_012288 pimr62 coding downstream 87362 39783268 ~ 39786222 (-)
XLOC_012287 pimr61 coding downstream 93678 39776296 ~ 39779906 (-)
XLOC_012286 pimr60 coding downstream 100585 39768680 ~ 39772999 (-)
XLOC_012285 gpr132a coding downstream 112498 39760145 ~ 39761086 (-)
XLOC_012291 NA coding upstream 122748 40009376 ~ 40022249 (-)
XLOC_012292 si:dkey-187k19.2 coding upstream 222431 40109059 ~ 40110782 (-)
XLOC_012293 LRFN2 coding upstream 324527 40211155 ~ 40512790 (-)
XLOC_012294 NA coding upstream 830288 40716916 ~ 40718108 (-)
XLOC_012295 NA coding upstream 832287 40718915 ~ 40719383 (-)
XLOC_012284 BX469926.1 non-coding downstream 231786 39641681 ~ 39641798 (-)
XLOC_012282 NA non-coding downstream 326097 39500572 ~ 39547487 (-)
XLOC_012283 BX469913.2 non-coding downstream 341655 39531815 ~ 39531929 (-)
XLOC_012281 BX571670.1 non-coding downstream 723901 39149567 ~ 39149683 (-)
XLOC_012296 NA non-coding upstream 842603 40729231 ~ 40739941 (-)
XLOC_012298 NA non-coding upstream 1012347 40898975 ~ 40903400 (-)

Expression


Co-expression Network