XLOC_012291


Basic Information

Item Value
gene id XLOC_012291
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 40009376 ~ 40022249 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024961
GTGGAAGAAGGTCAAACAAACTTTTTGGCCGGCATGGCTGTAAGAACaggtttatatttgttttgatgtttactttttttttaattttgacaaaatggACAATAAATTGGTTGGAATATCCAACTTTATTTGCAAAGAAATGgacatttcacttttttattgaCCCGTTTAAGCAACAAATGCGTCAGAATCAACTACCAAAATATTTGCATCTACACTTAAAGTCAAAAAGTTTGATCACTGTTTGGAGCTGGTTTTGATAAAGAATTTTATTTGCAAAGTTTAGAACCAAAGACTGAACCGGATCATGATGCAGACTACAGGAAAAGTTGAATGATCCGATCCACAGGAAGAAGAGGGCCGCGTTGAATGCTCGTGTGATAGTGGCGGCTGGATTGGAAAGGCTGTTTCTGGGATTCGACATGCAAAGGAGCTTTGCGTTTGGCTAAGGAGCAGCGCATGAGGACTCCATTGTTTCTTCTTGATCTACACAAGCATTGGATTATGAAGTCAACTCTGCTATGCGTCTTAAATCCTCCAACGTACACAATGAATCACTGGACAAACTAATAACAATGGAAAAGCCTGCAAAAAGAGGTCATAGGGGGAAAGATCTGCAACCTGGAG
>TCONS_00024962
GTCAAACAAACTTTTTGGCCGGCATGGCTGTAAGAACagTTTAGAACCAAAGACTGAACCGGATCATGATGCAGACTACAGGAAAAGTTGAATGATCCGATCCACAGGAAGAAGAGGGCCGCGTTGAATGCTCGTGTGATAGTGGCGGCTGGATTGGAAAGGCTGTTTCTGGGATTCGACATGCAAAGGAGCTTTGCGTTTGGCTAAGGAGCAGCGCATGAGGACTCCATTGTTTCTTCTTGATCTACACAAGCATTGGATTATGAAGGTATGAGATGTGACATTTTTAAAGCTTGAGCTACCATCAAACTGACTTTACATTTACATGGccatttaaaagaagaaaaagatgTGTGCAGAGTAAAAAAAAGGGTTTGTCTGTTTGTTATGGTTTATTTGTCAGTGTTTACAATGAGTTTGAGTCAAGTATGTGCTGTGTATATGATGTAAATAATGTGAATGTTTTACAGTTCAAATGGCTGATAAAAGTGAAACTGGTGTTTCTAA
>TCONS_00024198
CTCTCCTCACGACGAGCTGAGGGGTGTGGAAGAAGGTCAAACAAACTTTTTGGCCGGCATGGCTTTTAGAACCAAAGACTGAACCGGATCATGATGCAGACTACAGGAAAAGTTGAATGATCCGATCCACAGGAAGAAGAGGGCCGCGTTGAATGCTCGTGTGATAGTGGCGGCTGGATTGGAAAGGCTGTTTCTGGGATTCGACATGCAAAGGAGCTTTGCGTTTGGCTAAGGAGCAGCGCATGAGGACTCCATTGTTTCTTCTTGATCTACACAAGCATTGGATTATGAAGGTATGAGATGTGACATTTTTAAAGCTTGAGCTACCATCAAACTGACTTTACATTTACATGGccatttaaaagaagaaaaagatgTGTGCAGAGTAAAAAAAAGGGTTTGTCTGTTTGTTATGGTTTATTTGTCAGTGTTTACAATGAGTTTGAGTCAAGTATGTGCTGTGTATATGATGTAAATAATGTGAATGTTTTACAGTTCAAATGGCTGATAAAAGTGAAACTGGTGTTTCTAA

Function

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0009060 aerobic respiration biological_process
GO:0001501 skeletal system development biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0030199 collagen fibril organization biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0045333 cellular respiration biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044420 obsolete extracellular matrix component cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0098643 banded collagen fibril cellular_component
GO:0098644 complex of collagen trimers cellular_component
GO:0005576 extracellular region cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005583 fibrillar collagen trimer cellular_component
GO:0032991 protein-containing complex cellular_component
GO:1990204 oxidoreductase complex cellular_component
GO:0005615 extracellular space cellular_component
GO:0031090 organelle membrane cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0070469 respirasome cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024961 False 627 lncRNA 0.39 3 40009376 40022224
TCONS_00024962 False 507 lncRNA 0.40 2 40021476 40022214
TCONS_00024198 True 532 lncRNA 0.41 2 40021476 40022249

Neighbor

gene id symbol gene type direction distance location
XLOC_012290 prph2la coding downstream 122748 39873584 ~ 39886628 (-)
XLOC_012289 NA coding downstream 143337 39864881 ~ 39866039 (-)
XLOC_012288 pimr62 coding downstream 223154 39783268 ~ 39786222 (-)
XLOC_012287 pimr61 coding downstream 229470 39776296 ~ 39779906 (-)
XLOC_012286 pimr60 coding downstream 236377 39768680 ~ 39772999 (-)
XLOC_012292 si:dkey-187k19.2 coding upstream 86810 40109059 ~ 40110782 (-)
XLOC_012293 LRFN2 coding upstream 188906 40211155 ~ 40512790 (-)
XLOC_012294 NA coding upstream 694667 40716916 ~ 40718108 (-)
XLOC_012295 NA coding upstream 696666 40718915 ~ 40719383 (-)
XLOC_012296 NA coding upstream 706982 40729231 ~ 40739941 (-)
XLOC_012284 BX469926.1 non-coding downstream 367578 39641681 ~ 39641798 (-)
XLOC_012282 NA non-coding downstream 461889 39500572 ~ 39547487 (-)
XLOC_012283 BX469913.2 non-coding downstream 477447 39531815 ~ 39531929 (-)
XLOC_012281 BX571670.1 non-coding downstream 859693 39149567 ~ 39149683 (-)
XLOC_012298 NA non-coding upstream 876726 40898975 ~ 40903400 (-)
XLOC_012301 NA non-coding upstream 1292156 41314405 ~ 41316816 (-)

Expression


Co-expression Network