XLOC_012293 (LRFN2)


Basic Information

Item Value
gene id XLOC_012293
gene name LRFN2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 40211155 ~ 40512790 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024200
GTGAACGAGTGACCCAATGAGGTGGAATACTACTTTAGCGGAGTGCTGGAAGAGAAGTCACCTTGCCCCAGTTCTCCGAGAGCGCAGGGAGAGAGACAGACATCTTTGATTGTTTGTTGCCAGTAGGGAGACGGGAAGGAAACTATCTCTCTGGAAGCGTTTGGGTGGGAAAAGGCTGAGAGAAACAGCCATATGGCACAAGACACAATATAGGTACCTGTTTGTGATTTACCATGGCCAAAGTGCTCTGCAGCCTCCTTCTTCTAGGAAGCGCAGTGATGATGACCACCGCCTGCCCTAAATATTGTGTCTGTCAGAACTTGTCGGAGTCCTTGGGTACACTCTGCCCGTCGAAAGGTCTGCTGTTTGTGCCCCCTGATATTGACAGAAGAACTGTTGAATTACGCCTTGGAGGaaattacatcattaaaattaCTCAGCAAGACTTCACCAACATGACAGGCCTTGTGGACCTTACACTTTCAAGAAACACCATCAGCTTCATTCAGCCATTCTCCTTTGTGGATCTTGAAACTCTGCGTTCGTTGCACCTGGATAGCAACCGTTTGACAGAGCTGGGTCCAGATGTCTTACGAGGCTTAGTAAACTTGCAACACCTCATCCTGAACAACAACCAGCTTACACATATCTCCAAAGAAACTTTCGATGACCTGCTGCTCACCTTGGAGGACCTAGACCTCTCCTACAACAACCTGCGGGGCATTCCCTGGGACGCCATACGCAAGATGCTCAACCTACACCAGCTGAGTCTTGACCACAATCTCATCAACCACATTGCTGAGGGCACTTTCACTGATCTTGAAAAGCTAGCAAGGCTGGATCTTACATCAAACCGTCTCCAGAAGCTTCCACCAGATCCTATTTTTGCTCGATCGCAGAGCAACATCGTTCTCAGTACACCATTTGCCCCTGTTCTGTCTCTCAGCTTTGGTGGGAATCCTCTTCACTGTAATTGTGAGATTTTATGGTTGCGACGCCTAGAGAGGGAGGATGATATGGAAACCTGTGCCTCCCCTCCAAGCCTCAAAGGTCGTTACTTTTGGTATGTTCGAGAGGAAGAGTTTGTCTGTGAACCACCATTAATTACTCAACACACCCATAAGCTTTTGGTCCTGGAAGGACAGACGGCTAGTTTACGCTGCAAAGCTGTTGGTGACCCTATGCCTTTTATACACTGGATTGCACCAGATGACAGGCTAATAAGCAACTCATCCAGAGCTACTGTGTATGAAAATGGTACTTTAGACATTGCAATCACCACATCAAAGGATTATGGGACATTTACTTGCATTGCTGCAAATGCAGCAGGAGAATCAACAGCCTCAATTGAACTCTCCATCATCCAGCTTCCTCATCTCAGCAATGGAACTAACCGCACATCTCAGCCCAAGTCCAGACTATCTGACATCACCAGCTCCACTAAAACCAGTAAAGGCGAGACCAAAGCCCAGCCAGAGCAAGTCGTTTCAGTGTCAGAGGTCACTGGAGTCTCTGCTCTAATCAAGTGGATGGTTAGCAAAGTATCGCCCAAAGTAAAAATGTACCAGCTGCAATACAACTGTTCGGAGGATGATGTCCTGATTTATAGAATGATTCCGGCAATCAGCAGATCCTTTTTGGTCAACAACCTGATGCCAGGGATGCAGTATGATCTATGTGTGTTAGCCATCTGGGAAGACACTGCCACCACACTTACTGCAACCAACATAGTGGGCTGTGTGCAATTCGAGACACGTGATGAGTTTCCTCGCTGCCAGTCACTTCACAGTCAGTTTCTAGGAGGAACCATGATCTTAGTGATTGGTGGAGTGATTGTGGCCACTTTGTTGGTTTTTATTGTCATCCTTATGGTTCGCTACAAAGTGAACAGCGGTTTGCAAGTTGCAAAGTTAGTGACTGTGAGCAACACCTACTCCCAGACCAATGGGAGACCACAAGCTCCGCAACGTCTAAACAATGGTGCTCCTACACCACAGACACCAAAAACTGTAGTGGTGATGCGAGATGAAGTGGTGGAGTTTAAGTGTGGCTCCTTGCAGAGTAGCATCTCTTCCTCTTCATCCTCCTCAGCAGACACACTTGGATGTGAGAAAGTAGAGTCCTACAACCGGCATGGCGATTCAAACACCTTGCCTCATAGGTGGAAGCAGTCGTCAGCCAAAGCGCGGCCAAACTTGGATAACCTTCTTGGGGCATTTGCCTCTCTGGATTTGAGAGCTCCCACAAGAGATCCAGGAGGACCATCTTCCTCTGGGACCATGGCAATGGCCATGAGACCCCCCACTGACAAGGAGCCTCTGCTAGGCCGAGGAGATTCTAAGCTTGGAAAGCTTGTGATGCTGCCATCAGAGAACAAGCCCAAGCGCAGCCACTCATTCGACATGGGGGACTTTGGTGCTTCACAGTGCCTTAGCTACCCACGGCGCATCAGTAACATTTGGACTAAGAGGAGTCTCTCAGTTAATGGCATGCTCCTGCAGTGTGACGAGAGTGAGGGGGAAGGCGATAAAGCGACATTTGATAGCTCTGAGTGGGTCATGGAGAGTACAGTCTGACAGGGACATTGGATTAGCTCTGCCAAAagagaacaaaaaagaaaaagcattCTTTGAACTTTCGGGTAAAAAGGATACAAACTTGCTGTATCATATGACGTCAAGAAGGACTCAAATGGTATAATAAAAAGACACCTCAGCATTGGCCATGACTGTGTAATGCATGATTTTTCATCTCAATATTGTCCTTCTGTTCATttgatcacaaaaaaaaagaaaattttaatgtatttgtgagTTATAGGGATTCAAACAGGGCCAGAGCTCATCCTATTTATTGAGACATGAATGAAGGATATCTCCAGTTGCCTTCAAGCATTAAAGCAGATATGAATAAATACCCAAGAACAAGAGATGTTGGGGTATCTCAGAGAAGCAGGGAATAAAAGAGAGAGTTTATCCAACTGTGCGCTGCAGTTTGCCAAGAGGATTTTCTTCAGCTAATGTGGATGTGCATCACAATGGACCAAACGTTCCCATGAGGTGAGACTACACAGaaagaaacagaaagaaagaaagagatgcAAATGTAATGAAATTTTGTAGGTTCTTCTTTTGGTTTTGTTACTTCTATTGCAATGTTGGACCCCAGTTGCACActgttgattatttttattatatttatatgtcaGATTCatgtgagtaaaaaaaaaaaacaaaaaaaaaacaacgcagTCTGTCATACATGTATTTCACAACAAAATTCTACTAATTGTTGGTGATGCTTCATGACATTATGTGCctatatttcatttgtttttcagtGCATCTATCACATTTGTCATTAATTTCTGCATTTGGAAGTTGCTGTCTGAACAGATTACTGCAAATTTTAGAAAACAGAGACTAGCAGTCTGTCTAGCTGAGGACcatattacttaaaaaaagtgtACACACCCAATCAAGTCATCACAAAAAAAGAGAAGTAAATAATCTACCAAGATGTGCCAGATaagatttaattataatataattgtttTCTCCAACTACCTTGAAATTGTTACCATGGCATATGAAAATCTTTGATAAGGTCTACTTGGTATTATCAATGCACCATGGCATTGCAACAATATTATCCAAGATTATTCCAATGATAAGATAAAACATTATGGCTTTCTGTGATATCTAGTAAGGTAATTACCCCTAAAcactataaattatttttttctgttcctCTTTGTAAGATTAGTTTGTTACAGTAGCATTAATTAGTTAAGTTTGCAATCTACACATCCATATTCTTAAGTCTTAATGGGATAATTCATCCAAATACTCACCCTCAACTTTCTTTATTTAATTGAgcacaatataatatattttaaataaaactaaaaagccagcagttagctctctgcaactctcacactCTCAGGTCAGTAccttgatgggagaccacatgggaaagctactgtaggttgctgctggaagtggtgtttgtgagaccagcagggggcactcaaccagCGTTCTGTTTGAGTCCTAACAGCCCATTCACAAGGGGCGTCATCGTCAAtgctttccattcactttgaatgggtgacgtcaagtgTTGGGTGTCGGCTatgcttcagtggcgttgctcacTGTAGAAGTTgagactttctcaacttttcatcactgtatgcaaatacactagcTCAGACAGAAGCCGATTGCTGACTAACTTTATAAATGCCCTCTGTCAAGCtttgaagccccatgtgaatcagGCGCAATGCcctagtatattgatggggactctatactgctcagtgagcggcATCTTTCAAATGAGACATTAAGACATACTCACAcaaggtacagttgcctcgatccgggccaaagcacgcttgtccccccctcccgactcccccgacggcccgcactcacaccacaatcaggcctcagcatgcttacgtcatcgctgctgtgctgttcagtgagaagcgcacTCACTCAGTAGCTCAgtagagatttctctagttatatcgtttcagtcgtttgttatgcagtgacatgcagtcaaatatttcaccaaacagtccttagggatgcgatgacaaacagtcagatatttcgccgaacagatccgccactttagGCGCTCATAATCAtgaagccctcgtgctgcaggaatgaggaggtctgctaaaggcgtgcagctgtcgtgcagtgagaggtttgcgtttttaataaactacagtagtttgcgttcactgaacagtaagaatgaataataaatccatatgaaacagtcccttaaaagtcacgtctcgctttcagtttcgggctttggcgtgttttgcctcacactacaaacgtaccatGCCAAAGCctaagtgaaccacgctcaggcccagttcttccaaccgggccagggctggccaagttcttgagcccgattcagcgcactcacgcttctcaaacgatccaggaaacgggcctgtgcacggtacagatggcatagtgtgagtaggacCTAAATCgatgtcctgactctctgtggtcattaaaattccTAGGATGTCCCCTTAAAAAaatagtaggggtttaaccccaaccatccccatatcataattggattcatcactttgtctcctttccaccaatcagctgacatgtggtctggtgcaatatagCTGCCGTCATGTCAACCGGGTGAAAGCTGCAATGGTGGAttaggagattccccccaaaatatGGGTAAAAAGtgctttaagtgtccagaaaagcactttattaatgtaaggaattattattattattattattattattattattattataaaaacctgtaaccattttaTCTATAGTTAGAAAAACTaattttatggaagtcaatggttacatttttccaacattcttttgtgtttaacggaaTAAAGAAAAGCAAGCTGGTTTGGAAACAGTAAAGTGTGAGGAAACCATGACAGATCTTtccgttttgggtgaactatccctttaagactgaAATGTAGGTCAGAATGTTACGGTAGACAACATTTTGTGAAAGACAGGCGTTTGGGAAATGATCTGGATGACAGTTTTGTGTAGAAACTTTTCCTAGTGCCAAATGGTGGTGGAAAGCTTGATTTCACACAGAGGTGCATCATAAACTGGAGAAAAAACTGAGCTTCTCCATCATCATTGTGCCCTTGAGCGAAGGCACTTAACCTCAGGTTGCTCCACAGGGACTCTCCTGCTATTAGTGTACTGCAACTTGCTTCTGATGGAGGTGTTGGTTACATGATGTTTAAGAACTGGATAAATCATGTATAGTCATTATGTCAGATTTTACCATTTGAAAAATGTGGTGATACTTCCTATGAACACATCTATGCTATGCTTACATTTGAAAAGAGCTCAGAATGATATGACAATGCTATTATAGTGTTCTATGATCAAAAATATTGCTTTTGTTAGTTTGGGGGAAGGTGCATTATTAAATCATCATGATTTGATTTGGatcttttaaataaaaaccaTGAGTATTTTAAGTCTAATTGTCTGTAAAATATCAATGTATACATCATATTGCTTATAGAGAGTATGTGTTATAGATTAGTGTTCCTAGGAAGTTTTACCCATAACATACAATgtctatttttcttattttaaaagaatctttatttttctattttgtgAAAAGCTGACAGTTTTATTGCCTTTCTTTTGTCTGAAACAGTGTCACTGTATGTGGTTTGATTGTGTTACTATTAcagatatatatactgtatacaggaAAGATGTGGATAAGCAAACATAccatagttattttttatttttattttttcattattattattagtagtagtagtagtgctaTTTTTTAATTTGGGCCACATTATAGATTTGCATTCACTGTTTATAATTTGTTACTGCTCTTGGTATGATTCTTTCTACTTTTTGTATAAAAATCATTTAAGAATGTATGATGGTAATCTGTACAGAGAATTTATCTTCCTggtcagaaaaagaaaacacaaaaaaaagtgagagagagagagaatgtgctttaatgtattGTTATGACATACGCGTAAATGTGAAGCAGCATAGTCGCGTTTTTCACTTGGAGttgtagaaaaaaatgaaaaagataaaatcATTCTAAACCATTTCTGTGTTCAAAAGATTTTGCTACAACAAGATAAAGACACAGAATTCATAATTAAAGCTGTCTGTTTCCTTTTTTGTCTCCTTGTCTTTCAGCCTTCCAGGTTTTGTGCATTTCTTTCTTATATATCTAACTGATTTTTGTCTTACTCACGTCATTACAATTAGGGATTTCATTCTCTCCAGAAAATTCACACAGCAAGATGTACTTATTAATGAATATACTCCAAGGGTGATTCCTCAAAGATTAGATGAATGCACTCTAGGGGTGCACAAAAACTAATTAAGTGACTGTAGTagtcataaaacattaaaataagacACATGGCCTACTGAGATGCAAACACTTTCCATGACTGAGATGCATGCATTTTCCATCATTTTGCTTGCTGCCTCAGATACCACCTCCCTTAGAGTTTCATTTATGCTTTACACATTTAATTAGGCATGTTGTCATGGTCTATAGTTATTTAAAGGGATATACTGTAGATTGAGCATTTAAAATTGCtcagtgtttttattttgaagtctaacaacaaaacacattttgtaCCTAAATTcctcaacacagg
>TCONS_00024963
AATACAATCACAACACAAACAGGTGAACGAGTGACCCAATGAGGTGGAATACTACTTTAGCGGAGTGCTGGAAGAGAAGTCACCTTGCCCCAGTTCTCCGAGAGCGCAGGGAGAGAGACAGACATCTTTGATTGTTTGTTGCCAGTAGGGAGACGGGAAGGAAACTATCTCTCTGGAAGCGTTTGGGTGGGAAAAGGCTGAGAGAAACAGCCATATGGCACAAGACACAATATAGcagTGCACACAATGCCAAATTCCCCAGGAGAAGCAGCATTGATCTACTGAAAGCTGCGTAAGTTTTCTATCCCAGGGAATCAGTGTGACAAAAAGCATCAGTGTGAGACTAATGCACCAGAAATGCCACCGTTGCCGCCCAGTGTTTTTGTGGGAACCTTTGTTTG
>TCONS_00024964
CATCTGCACATCCACGGAGTGCCCCTGATCACCGTCTACGTACGCTTGGTACCTTTCCGTTTCAACTGCTCTGCGCTCCTCGCAACATATTGTTTTGAAAACTAGGATCGCCGTTTTCCTCGGGGTGTATCTGGATATCCCTTTAGTTTGCCAACGGAATAGTCAACGCGTTTATGGATTCACGACAAAACAATGGAGAAACAGGCATCAACTGAAACAAGGGAATAAACGGGGGACGCTCGGAGAGAGGAATAACCAGTTTAACAAGAAATCTGGGGTAACTGCCCGATCTGGAGGTGCGTGTGGTcgttttcagctcattttggtGGAAACTACACAGGGATGGTGTTCTAGGACTCGGAATTTCAGTGTGCAAAAGAATGCACCCGGCTTTGGTTTGCCACTTTTCTTTTAAATCAAATAAGATGCGCTGAAAGAGCGGATGTTTTAAGCGCCTCCGTTTAGGAATCAAGTGGAATCAGAGCGAATGGATACCTTTTCGACGATTAAGGTGAACGAGTGACCCAATGAGGTGGAATACTACTTTAGCGGAGTGCTGGAAGAGAAGTCACCTTGCCCCAGTTCTCCGAGAGCGCAGGGAGAGAGACAGACATCTTTGATTGTTTGTTGCCAGTAGGGAGACGGGAAGACTAGAACCCGGTCATCGTTGTCGTCGTCATCAACTTCTCTCTGCTTCTCAAGCCCGCGGACGTAAacaacgagctaactggacaaactggttgtagtggaaaagccctccacacagagGAAACTATCTCTCTGGAAGCGTTTGGGTGGGAAAAGGCTGAGAGAAACAGCCATATGGCACAAGACACAATATAGcagTGCACACAATGCCAAATTCCCCAGGAGAAGCAGCATTGATCTACTGAAAGCTGCGTAAGTTTTCTATCCCAGGGAATCAGTGTGACAAAAAGCATCAGTGTGAGACTAATGCACCAGAAATGCCACCGTTGCCGCCCAGTGTTTTTGTGGGAACCTTTGTTTG
>TCONS_00024965
gtctgtgtgtctgtctgtctatatatcgatccatctatctatttatctatcccaAGGTGTAAAAGACATGGCAAGCGTTCTCTATTGTTAAGTAAGTTAATTGGGACAAATCTGCTCAAACTCTCAAAGACTAATCATCTAGGTTAAGTAAGGGCAAAGATAATCCGCATGCTCGCAGTCCAAGTTGATCCGACACAATCGGACAACCCACGTCTAATCGCACTCAACCCCGCATCGGCCATTACCCGCAAAGTCTAGTTATGGAGGTTTAATGAACGCACAGCTAATGCGTAAATCCGGACGCCTTGGCATGCGCCATATGCGCCTGACCGTACATTACAGCAATCCTGATAAGCTTAACGGAGTTGTTCCTGCGACGCATCATGTCCGTTCTGACTGGTTTGTGCAATTTATCCATCTGCACATCCACGGAGTGCCCCTGATCACCGTCTACGTACGCTTGGTACCTTTCCGTTTCAACTGCTCTGCGCTCCTCGCAACATATTGTTTTGAAAACTAGGATCGCCGTTTTCCTCGGGGTGTATCTGGATATCCCTTTAGTTTGCCAACGGAATAGTCAACGCGTTTATGGATTCACGACAAAACAATGGAGAAACAGGCATCAACTGAAACAAGGGAATAAACGGGGGACGCTCGGAGAGAGGAATAACCAGTTTAACAAGAAATCTGGGGTAACTGCCCGATCTGGAGGTGCGTGTGGTcgttttcagctcattttggtGGAAACTACACAGGGATGGTGTTCTAGGACTCGGAATTTCAGTGTGCAAAAGAATGCACCCGGCTTTGGTTTGCCACTTTTCTTTTAAATCAAATAAGATGCGCTGAAAGAGCGGATGTTTTAAGCGCCTCCGTTTAGGAATCAAGTGGAATCAGAGCGAATGGATACCTTTTCGACGATTAAGGTGAACGAGTGACCCAATGAGGTGGAATACTACTTTAGCGGAGTGCTGGAAGAGAAGTCACCTTGCCCCAGTTCTCCGAGAGCGCAGGGAGAGAGACAGACATCTTTGATTGTTTGTTGCCAGTAGGGAGACGGGAAGGAAACTATCTCTCTGGAAGCGTTTGGGTGGGAAAAGGCTGAGAGAAACAGCCATATGGCACAAGACACAATATAGcagTGCACACAATGCCAAATTCCCCAGGAGAAGCAGCATTGATCTACTGAAAGCTGCGTAAGTTTTCTATCCCAGGGAATCAGTGTGACAAAAAGCATCAGTGTGAGACTAATGCACCAGAAATGCCACCGTTGCCGCCCAGTGTTTTTGTGGGAACCTTTGTTTG

Function

symbol description
lrfn2 Predicted to be involved in modulation of chemical synaptic transmission and regulation of postsynapse organization. Predicted to be located in plasma membrane. Predicted to be active in Schaffer collateral - CA1 synapse and cell surface. Predicted to be integral component of postsynaptic density membrane.

GO: NA

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

Ensembl:

ensembl_id ENSDARG00000106248

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024200 False 7246 mRNA 0.41 4 40211155 40397752
TCONS_00024963 False 401 lncRNA 0.48 4 40289003 40423207
TCONS_00024964 False 1009 lncRNA 0.48 5 40289003 40512375
TCONS_00024965 True 1305 lncRNA 0.47 4 40289003 40512790

Neighbor

gene id symbol gene type direction distance location
XLOC_012292 si:dkey-187k19.2 coding downstream 100373 40109059 ~ 40110782 (-)
XLOC_012291 NA coding downstream 188906 40009376 ~ 40022249 (-)
XLOC_012290 prph2la coding downstream 324527 39873584 ~ 39886628 (-)
XLOC_012289 NA coding downstream 345116 39864881 ~ 39866039 (-)
XLOC_012288 pimr62 coding downstream 424933 39783268 ~ 39786222 (-)
XLOC_012294 NA coding upstream 204126 40716916 ~ 40718108 (-)
XLOC_012295 NA coding upstream 206125 40718915 ~ 40719383 (-)
XLOC_012296 NA coding upstream 216441 40729231 ~ 40739941 (-)
XLOC_012297 supt7l coding upstream 347226 40860016 ~ 40879108 (-)
XLOC_012298 NA coding upstream 386185 40898975 ~ 40903400 (-)
XLOC_012284 BX469926.1 non-coding downstream 569357 39641681 ~ 39641798 (-)
XLOC_012282 NA non-coding downstream 663668 39500572 ~ 39547487 (-)
XLOC_012301 NA non-coding upstream 801615 41314405 ~ 41316816 (-)

Expression


Co-expression Network