XLOC_012296


Basic Information

Item Value
gene id XLOC_012296
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 40729231 ~ 40739941 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024967
TTTTTATTCTCCTATTTTAGAATTTAGAATAAGCTGTTAAAGCTTTGCATGGTAGCAGGCTGCCCATTATATCTGCAGGGGGAAAGAAGCCTTGGGGACCATACGAGACCAATTCTACTACTGGCTTACATCACCATAAGCTATCTGGATGAGGTGCTCTGCGAGTTCTACAATGCGAGCCTGAACGCCGCCTGCAGAACACGCTCGTCCAAAGATGGTCCTTAAGGCAATTTTTCCGACTATGTGGAGTGAACACTGTTGAGGAATGGATCTACGTTCACTGTGGGCCTGCCAGCCAGCATCAGCAGCACGAAAGTGTCGCTTGATGTCATCGACTCCGCCCTCCAAGCTGCTGGCTCCACGTTGGCTGCCTCGTCTCTTCCTTGGACCGTCAGCCCTCCAGCTCCGCTAGGCTCCCTTGTACCTCCAGCTCCACCTTGGTCAGTTGTCGCCTGGCCTTCGCCTCTGAACTTTACTGGTTTGGCTTTGCCCTGTAGCTCCATACTTCTGGCTTTGTTGAGCTCTTCCTTCCCTCCAGCTGTGCCTTGGTCCTCTGTTGCTCTGGCTCCGCTGCAGGCTTCCAGACCCATGTCTTTGCCTTGGTCGGGTGAGCCGTCTGCTCCACCTTGACCCTCTAGTACCTCGGCATCATCCTCACCCATCGGCTCTACGTCTCCTCCTTGGGCTCCACCTTCATCAGTGGCATCTCTCATCATGGCTCCTCCTTCCTCTGACTCCTCCCTGGCCACGTTCTCTAGCTCTCCTCCTGGTTCCATTCTCCTAAGACTCCTCCATGGCTCTTCCTCCTTCCAGCCCCTGTCTTTATTTTGTTGTGTAGAAGGTGCAAGGATGCACCTTCAAAAGGAGGGGGTAATGTCAGGgttctgcttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttccatgtGCTTATGTTTTTGTCATGTGATCCATTTGTTCAGTTCTCCCACCTGTTGTTAGTCTGAGCTTCACCTGTGTCTCACCCCTGTGTGTAGTTCAATGATGCCCTTTGATGTGTTCAGTCCAGCGGTGTTAAACATCATCCTTGTTGTCTTAACCCCAACATTTCTGTGTGTTGACATTCCAGTGTTTCCAGTTAATGTTATATGAGAAAATGCCTTTGAGTCTTTTTAgggcaacctgaaaaaatgtagattttgtttaatttaaacgttTAGGAAAAACTTAAGAGACCGTTGTTGTTGTTTGACTTCATTGGTGATttttaatatgtaatgtaattgtaagctaGAAACCAGGGTCAGTTtagcacaaccatttctcctctggccaaacttcctgtg
>TCONS_00024968
TGGCAATGTGGATGACGTCATTTCTGATTGCATCTCATTGTCACTTATAATAGCCTATTAGCACATATTTCCTCCAGGATTTAAGGCTGTGGTATGCTACCTGGAGTGCGTTACGGCCAGAACCTCCCCTCGCCGAGGTGTGTGTACACTGATGCAGGGGGAAAGAAGCCTTGGGGACCATACGAGACCAATTCTACTACTGGCTTACATCACCATAAGCTATCTGGATGAGGTGCTCTGCGAGTTCTACAATGCGAGCCTGAACGCCGCCTGCAGAACACGCTCGTCCAAAGATGGTCCTTAAGGCAATTTTTCCGACTATGTGGAGTGAACACTGTTGAGGAATGGATCTACGTTCACTGTGGGCCTGCCAGCCAGCATCAGCAGCACGAAAGTGTCGCTTGATGTCATCGACTCCGCCCTCCAAGCTGCTGGCTCCACGTTGGCTGCCTCGTCTCTTCCTTGGACCGTCAGCCCTCCAGCTCCGCTAGGCTCCCTTGTACCTCCAGCTCCACCTTGGTCAGTTGTCGCCTGGCCTTCGCCTCTGAACTTTACTGGTTTGGCTTTGCCCTGTAGCTCCATACTTCTGGCTTTGTTGAGCTCTTCCTTCCCTCCAGCTGTGCCTTGGTCCTCTGTTGCTCTGGCTCCGCTGCAGGCTTCCAGACCCATGTCTTTGCCTTGGTCGGGTGAGCCGTCTGCTCCACCTTGACCCTCTAGTACCTCGGCATCATCCTCACCCATCGGCTCTACGTCTCCTCCTTGGGCTCCACCTTCATCAGTGGCATCTCTCATCATGGCTCCTCCTTCCTCTGACTCCTCCCTGGCCACGTTCTCTAGCTCTCCTCCTGGTTCCATTCTCCTAAGACTCCTCCATGGCTCTTCCTCCTTCCAGCCCCTGTCTTTATTTTGTTGTGTAGAAGGTGCAAGGATGCACCTTCAAAAGGAGGGGGTAATGTCAGGgttctgcttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttccatgtGCTTATGTTTTTGTCATGTGATCCATTTGTTCAGTTCTCCCACCTGTTGTTAGTCTGAGCTTCACCTGTGTCTCACCCCTGTGTGTAGTTCAATGATGCCCTTTGATGTGTTCAGTCCAGCGGTGTTAAACATCATCCTTGTTGTCTTAACCCCAACATTTCTGTGTGTTGACATTCCAGTGTTTCCAGTTAATGTTATATGAGAAAATGCCTTTGAGTCTTTTTAgggcaacctgaaaaaatgtagattttgtttaatttaaacgttTAGGAAAAACTTAAGAGACCGTTGTTGTTGTTTGACTTCATTGGTGATttttaatatgtaatgtaattgtaagctaGAAACCAGGGTCAGTTtagcacaaccatttctcctctggccaaacttcctgtg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024967 False 1332 lncRNA 0.49 2 40729231 40739732
TCONS_00024968 True 1411 lncRNA 0.49 2 40729231 40739941

Neighbor

gene id symbol gene type direction distance location
XLOC_012295 NA coding downstream 9848 40718915 ~ 40719383 (-)
XLOC_012294 NA coding downstream 11123 40716916 ~ 40718108 (-)
XLOC_012293 LRFN2 coding downstream 216441 40211155 ~ 40512790 (-)
XLOC_012292 si:dkey-187k19.2 coding downstream 618449 40109059 ~ 40110782 (-)
XLOC_012291 NA coding downstream 706982 40009376 ~ 40022249 (-)
XLOC_012297 supt7l coding upstream 120075 40860016 ~ 40879108 (-)
XLOC_012298 NA coding upstream 159034 40898975 ~ 40903400 (-)
XLOC_012299 si:dkey-16j16.4 coding upstream 172130 40912071 ~ 40956035 (-)
XLOC_012300 rbks coding upstream 259894 40999835 ~ 41081806 (-)
XLOC_012301 NA coding upstream 574464 41314405 ~ 41316816 (-)
XLOC_012289 NA non-coding downstream 863192 39864881 ~ 39866039 (-)
XLOC_012284 BX469926.1 non-coding downstream 1087433 39641681 ~ 39641798 (-)
XLOC_012302 NA non-coding upstream 642287 41382228 ~ 41428926 (-)
XLOC_012304 NA non-coding upstream 1352393 42092334 ~ 42092836 (-)
XLOC_012306 NA non-coding upstream 1427246 42167187 ~ 42176988 (-)

Expression


Co-expression Network