XLOC_012310


Basic Information

Item Value
gene id XLOC_012310
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 42540854 ~ 42564152 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024976
AACGAATACCGTCCTACGGGCATCAGACAAAAATTCGAAAACAACTTTGAATATTGCACGAGAAGATGGCATCAGAACACCTCCGTGTCATCTAAATGGTCTGTGCTCAGTGCTGGAACACCCAAGTGGAGCTGGTCTCCCGGGAGATCTGCGGGACACCCATCTTACAAGCTATGTGAATGATCTTCATCATCATGTCATGACCCTTCATCAATTGGCAACAGCCTTCCATGAAACAGGTTCACCTGTCGCAGCCCACAGTCACGTCTGACCTGGATGCATGAGCAAGATAACATTCACATCTGCAACGTCAAGAGAGAGGGGCACAAGGAAGCCTGACATTAATGATTAACGGCGCTAAAAGCCCCTGCTTTTGTATTCCCATGGAGTCTGGTGCATCTGTGATCATGTGACCTGAAAAGAGGAGATTGGGGGAGTGAGCGCTAAAGCAAACACAGGTGAATGAAGAACACTGTAATGCAGAGCGCAGCTGTTGGTGTTTGATCTGGATGAGGAGAAAGGACAGCCGCTGCTGACAGGTGTACCTGACAGAGGACTGGAAAGCCAGACGCTTTTACCTCTCAGACAGATGAACAGACGGAAGCCATTAGAGTACATTCACTGCCATCATAATACTGAC
>TCONS_00024977
GAGGCTTCCAGCCTTGTGCAGAAGGCAGCGGGAGAGACAACGAATACCGTCCTACGGGCATCAGATGTGAATGATCTTCATCATCATGTCATGACCCTTCATCAATTGGCAACAGCCTTCCATGAAACAGGTTCACCTGTCGCAGCCCACAGTCACGTCTGACCTGGATGCATGAGCAAGATAACATTCACATCTGCAACGTCAAGAGAGAGGGGCACAAGGAAGCCTGACATTAATGATTAACGGCGCTAAAAGCCCCTGCTTTTGTATTCCCATGGAGTCTGGTGCATCTGTGATCATGTGACCTGAAAAGAGGAGATTGGGGGAGTGAGCGCTAAAGCAAACACAGGTGAATGAAGAACACTGTAATGCAGAGCGCAGCTGTTGGTGTTTGATCTGGATGAGGAGAAAGGACAGCCGCTGCTGACAGGTGTACCTGACAGAGGACTGGAAAGCCAGACGCTTTTACCTCTCAGACAGATGAACAGACGGAAGCCATTAGAGTACATTCACTGCCATCATAATACTGAC
>TCONS_00024549
GAGGCTTCCAGCCTTGTGCAGAAGGCAGCGGGAGAGACAACGAATACCGTCCTACGGGCATCAGATGTGAATGATCTTCATCATCATGTCATGACCCTTCATCAATTGGCAACAGCCTTCCATGAAACAGGTTCACCTGTCGCAGCCCACAGTCACGTCTGACCTGGATGCATGAGCAAGATAACATTCACATCTGCAACGTCAAGAGAGAGGGGCACAAGGAAGCCTGACATTAATGATTAACGGCGCTAAAAGCCCCTGCTTTTGTATTCCCATGGAGTCTGGTGCATCTGTGATCATGTGACCTGAAAAGAGGAGATTGGGGGAGTGAGCGCTAAAGCAAACACAGGTGTTTGGGCTGCTGCTGTTAGGGACAACTGCAAACACAGTCCACCATACTCACCCACAACCTCActacagccaatcacagacacaGACAGCCCTGCCTGACATTTCACTTGACAATTAAGACTTTTTGATTGCCTAATAAAGTTTCAGTACATGTAAGGAGCTGTGGATTCTTAATTAAGCACCATAAATAGGTACAGACTATTTAACATAATAGGCAAAGAATAAGTAAACAATGCTTGTTTtccttataaaaaataataattaatcacaACAGCCACAACAGGTCATACGGGAAATGCAACATTCTTTTGAAACAACCCCTGCAAATAATTTGTTGccctaatatttaaataaaacacaaatacc
>TCONS_00024219
CAGAAGGCAGCGGGAGAGACAACGAATACCGTCCTACGGGCATCAGACAAAAATTCGAAAACAACTTTGAATATTGCACGAGAAGATGGCATCAGAACACCTCCGTGTCATCTAAATGGTCTGTGCTCAGTGCTGGAACACCCAAGTGGAGCTGGTCTCCCGGGAGATCTGCGGGACACCCATCTTACAAGCTGTAATGCCGCTTTAACCCATTGCTGGGGAGGGACCGTTCACACTACCCCGATTTAAGACCAAATACTCCTAATCCCGCTGATGTCCCACACTATATTAACGCACAACACAGACGCTTAATCTACGCCCTAAAGTTAGAAAGGCAGTTTCACTGCAATATGCCGAATAGGATTAGGTTAGTCTTTGTAATAGTCTTTAAGGCATTTTAAACGCCGGGCAATGCGATTACATGTAAAAGTATTATATTCTCCCCCAAAACAGATAAAAAAGTTCATacaacaataacaattatactaactatttaaatcaaaatatagTTGTATGCTgggattaaattattattatttgtaattgtaaaaaatgtttaaatcattcactcttgcttgttttgtttagtttaaatgtttttggaaTACTTCCATATTTATCTATTGGTCATTTTATGACAATGTCAGAACACATTTTATCGCCTAAAGATGACCTTGAACTTGTTGTGTATATTTgaagaaataaaaatgtgaaaaag

Function

GO:

id name namespace
GO:0072068 late distal convoluted tubule development biological_process
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0006928 movement of cell or subcellular component biological_process
GO:0006935 chemotaxis biological_process
GO:0030154 cell differentiation biological_process
GO:0000902 cell morphogenesis biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0030182 neuron differentiation biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009891 positive regulation of biosynthetic process biological_process
GO:0031328 positive regulation of cellular biosynthetic process biological_process
GO:0120039 plasma membrane bounded cell projection morphogenesis biological_process
GO:0022900 electron transport chain biological_process
GO:1902680 positive regulation of RNA biosynthetic process biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048858 cell projection morphogenesis biological_process
GO:0051254 positive regulation of RNA metabolic process biological_process
GO:1903508 positive regulation of nucleic acid-templated transcription biological_process
GO:0048869 cellular developmental process biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0032990 cell part morphogenesis biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0040011 locomotion biological_process
GO:0097485 neuron projection guidance biological_process
GO:0061564 axon development biological_process
GO:0048666 neuron development biological_process
GO:0048667 cell morphogenesis involved in neuron differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0045935 positive regulation of nucleobase-containing compound metabolic process biological_process
GO:0007409 axonogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0042330 taxis biological_process
GO:0072025 distal convoluted tubule development biological_process
GO:0010557 positive regulation of macromolecule biosynthetic process biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0031175 neuron projection development biological_process
GO:0016049 cell growth biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:1990204 oxidoreductase complex cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0070469 respirasome cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-LINCRNAG-131121-325 Acts upstream of or within with a positive effect on heart development and vasculature development.

Ensembl:

ensembl_id ENSDARG00000097567

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024976 False 640 lncRNA 0.48 4 42540854 42564114
TCONS_00024977 False 531 lncRNA 0.49 3 42540854 42564152
TCONS_00024549 False 717 lncRNA 0.43 2 42545940 42564152
TCONS_00024219 True 718 lncRNA 0.38 2 42561960 42564134

Neighbor

gene id symbol gene type direction distance location
XLOC_012309 CR925755.2 coding downstream 48186 42486740 ~ 42492668 (-)
XLOC_012308 NA coding downstream 268256 42261845 ~ 42272598 (-)
XLOC_012307 nkx2.2a coding downstream 322202 42208623 ~ 42218652 (-)
XLOC_012306 NA coding downstream 363866 42167187 ~ 42176988 (-)
XLOC_012305 nkx2.4a coding downstream 443587 42095247 ~ 42097267 (-)
XLOC_012311 foxa2 coding upstream 1846 42565998 ~ 42568498 (-)
XLOC_012312 prkd3 coding upstream 45942 42610094 ~ 42799104 (-)
XLOC_012313 mocs3 coding upstream 248113 42812265 ~ 42842863 (-)
XLOC_012314 zgc:92137 coding upstream 419831 42983983 ~ 42988356 (-)
XLOC_012315 atg2b coding upstream 441276 43005428 ~ 43012390 (-)
XLOC_012304 NA non-coding downstream 448018 42092334 ~ 42092836 (-)
XLOC_012302 NA non-coding downstream 1111928 41382228 ~ 41428926 (-)
XLOC_012301 NA non-coding downstream 1224038 41314405 ~ 41316816 (-)
XLOC_012319 NA non-coding upstream 686106 43250258 ~ 43251920 (-)
XLOC_012328 NA non-coding upstream 1077665 43641817 ~ 43649494 (-)
XLOC_012330 FO704797.1 non-coding upstream 1144247 43708399 ~ 43718395 (-)
XLOC_012332 NA non-coding upstream 1440287 44004439 ~ 44010882 (-)
XLOC_012333 BX511267.1 non-coding upstream 1494659 44058811 ~ 44058927 (-)

Expression


Co-expression Network