XLOC_012319


Basic Information

Item Value
gene id XLOC_012319
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 43250258 ~ 43251920 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024978
cagatgcagaaacttttgacatatgaattcatcttgactaagggtaatgtttttgttcagaattaatcattatttaaaatcattgtattttctttgttattatgtacagattttaaaagaatgtactttcttttaataaagaactcttcacagcactgcagctaaacagtcacaacctcacagagctgcacaactgccccactcaagatcagtgttgaagctggaacctcatcttgtgtacagcaaaggcagagctgaaaattcactgtttgtcttgtattgtgtggtaagtcatagtttaattaatttttttattttattgcaacactaagtagtccattctgtggccaatatgatataaagggcctaaaatgggactgatgtgatcattgttttgatttctagataagtactcatggggctacacatgcagctgaagttagcttcattgagtaggacatttctttcagtatactcttaaagagattcacccaaaaatgaaaattctgtcattattgactcatccttcacttgttccaaatatgtCTGACTTGCttacttcagttaaacacaaaaaaattatattttaaagaaagatgaaaacctgcaaacattaacttccatagtatttgttttttcctactatgcatgtcaatgttttcagctttccagctttcttcaaaaaacttccttcatgttcaacacaaagtaacttggaagttttttaaaaaggtttacaaccacttaaaggagagtaaatagtgaactgttcctttaacccaatctagttgactttactagaaaattgtatagaaacccagtggcttaaaccccttacattttatacaaggtacaacttaacagccatacttgaattaaaatattactgtaagttcaagaagattgtaaaggttctaggttaatttaaagtgggctgtttagtttcaccttgtgtaAAAAACATAAAGGATTTAAGGCAACATGTTTCGATGCAGTTTTctaataaagtcaactagtttGGGTTAAGAGTGTAATGGTTTACAGTAAAAGCAGTAAATCATgcaggcataaaataaatgtttagccatgtaaagcaataagcttgttataatttagaaatattttagggtgaagcacagtatgctgttgtagttttcatataattgatgagtcaaacatgagatgtgttttaaattgcaagacgtgaattaacaatatgttcatcaagattcaaatcttgcatcttatattttttaaggttttggcccaataatacccatattctgctatttaaaaaaacatgctggaatttgtGTCAGCATTCCCTTCAATGAAAACTACAACAGTGGACATCAGtggtaataaaaatgtatgtgaagGATAAGGGTGTTCATAATGAGAAGTGCAGTTACTATCCTGATCTCTGAGTTTGTAGAACTGACAGATCTGCTTGGAATACATGGAAACATACTGGAAATGTTTAACCTATTATACAGTTAATTCAAGAGTGCCAGGTTTAATGacactttacatatataaataaatatcactgaactttctaaatgaaacctaacactaattctttgttcagtaatgatgttgtgcacttctaatactttacagtggcaaaacctggaataacacatgggagccctccaggaat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024978 True 1663 lncRNA 0.33 1 43250258 43251920

Neighbor

gene id symbol gene type direction distance location
XLOC_012317 npc2 coding downstream 218430 43030317 ~ 43031828 (-)
XLOC_012316 NPC2 coding downstream 227790 43021662 ~ 43022468 (-)
XLOC_012315 atg2b coding downstream 237868 43005428 ~ 43012390 (-)
XLOC_012314 zgc:92137 coding downstream 261902 42983983 ~ 42988356 (-)
XLOC_012313 mocs3 coding downstream 407395 42812265 ~ 42842863 (-)
XLOC_012320 itpk1b coding upstream 45536 43297456 ~ 43400039 (-)
XLOC_012321 plk4 coding upstream 158833 43410753 ~ 43428397 (-)
XLOC_012322 hspa4l coding upstream 178445 43430365 ~ 43466317 (-)
XLOC_012323 mrpl35 coding upstream 260956 43512876 ~ 43517542 (-)
XLOC_012324 si:dkey-21a6.5 coding upstream 267370 43519290 ~ 43533095 (-)
XLOC_012310 NA non-coding downstream 686106 42540854 ~ 42564152 (-)
XLOC_012308 NA non-coding downstream 977660 42261845 ~ 42272598 (-)
XLOC_012306 NA non-coding downstream 1073270 42167187 ~ 42176988 (-)
XLOC_012304 NA non-coding downstream 1157422 42092334 ~ 42092836 (-)
XLOC_012302 NA non-coding downstream 1821332 41382228 ~ 41428926 (-)
XLOC_012328 NA non-coding upstream 389897 43641817 ~ 43649494 (-)
XLOC_012330 FO704797.1 non-coding upstream 456479 43708399 ~ 43718395 (-)
XLOC_012332 NA non-coding upstream 752519 44004439 ~ 44010882 (-)
XLOC_012333 BX511267.1 non-coding upstream 806891 44058811 ~ 44058927 (-)
XLOC_012334 NA non-coding upstream 818421 44070341 ~ 44116077 (-)

Expression


Co-expression Network