G400526


Basic Information

Item Value
gene id G400526
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000258
NCBI id null
chromosome length 191677
location 14399 ~ 40303 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU459781
ATGGGATCCTCTTGACTGGGTGGAGCTGGAGATCGAAAGACCAGAGGCATATCCACACAACAGAAAGGCGTTAGAGGACAAGTCGGGGGCTAAAGGAAACCAGCAGAGGCGGGGCTGACAGACTGGCTGAATCAAGAAGAGAAGGCTGGAGAGAGAGGCTGGGTGGGATCAGTGATGATGAAACAGACTTTTTTCAGAATGTCTAAACAGGCTTTATGCTGCCAGTAGCAACAATGAACTTGAGTTGGGCAGGACCAGAGACGATGAATATACACTAGTGCAGGAAGGGACAAGCAGAAGAGAAGGTGTTTCTGAGCGAATCATCATCTCTTGGGTATGTGTGACTCTGTTGATGGGAGTGTCAGTCCTGTTATTATACAAATCAAGATACATCAAGACACGAGGTGACAATCGCACACACGCAAACACACACATGATTTAANNNNN
>TU459780
GTCATATCTTACAGGTGAAAGGTGATCCCACAGGCTCTCGTTTTGAGACTACAGCAATTGGAGCATCCGTAGGCTGCACAAAAGTCTGGCATCTTCTCCTATAAAGCCAGCAATTTCCTGTATCATAATGTGTTTCTGAGCGAATCATCATCTCTTGGGTATGTGTGACTCTGTTGATGGGAGTGTCAGTCCTGTTATTATACAAATCAAGATACATCAAGACACGAGGTGACAATCGCACACACGCAAACACACACATGATTTAANNNNN

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU459781 False 447 lncRNA 0.47 2 14399 40303
TU459780 True 271 lncRNA 0.42 2 39143 40303

Neighbor

gene id symbol gene type direction distance location
CI01000258_00000064_00004613 NA coding upstream 8958 64 ~ 5441 (+)
CI01000258_00042250_00044020 NA coding downstream 1947 42250 ~ 44437 (+)
CI01000258_00045044_00048458 NA coding downstream 4741 45044 ~ 48458 (+)
CI01000258_00096312_00110058 NA coding downstream 56009 96312 ~ 111157 (+)
CI01000258_00137907_00154325 NA coding downstream 95443 135746 ~ 154356 (+)
G400521 NA non-coding downstream 575 41355 ~ 43226 (+)
G400539 NA non-coding downstream 4482 44785 ~ 63511 (+)
G400544 NA non-coding downstream 14481 54784 ~ 55264 (+)
G400561 NA non-coding downstream 70962 111265 ~ 113040 (+)
G400530 NA non-coding downstream 79009 119312 ~ 122131 (+)
G400533 NA other downstream 116146 156449 ~ 158626 (+)

Expression


Co-expression Network