G400521


Basic Information

Item Value
gene id G400521
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000258
NCBI id null
chromosome length 191677
location 41355 ~ 43226 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU459765
TGATATTAAACAAATAGACCAAGTACACTACCCCAGCCAAGGTTCAGTGATGGACATGACAGCCCTACGAAATGTGCAGCCAAACAGGGCATGCATCCACAAAGCAGTGACCAAATGAAGATGATAAAAAATGCTTTAAATGAAAAGGAATCACAACAACAATTTTTGGCTCAAGTAGGAGCAACAATTCTGGACAGATCAGATTTTATTACCTTGGGACATCCAAATGATGTTGAAGGGACTATTTTGAATGCCTGCCTTTCAATGGTCAGAGATATTGCTGACTTAAAGGTAATATTTTTCCTGTCTTCTCTGTAGAACCTTTTTTTTTTGGAGTGAG
>TU459770
TGATATTAAACAAATAGACCAAGTACACTACCCCAGCCAAGGTTCAGTGATGGACATGACAGCCCTACGAAATGTGCAGCCAAACAGGGCATGCATCCACAAAGCAGTGACCAAATGAAGATGATAAAAAATGCTTTAAATGAAAAGGAATCACAACAACAATTTTTGGCTCAAGTAGGAGCAACAATTCTGGACAGATCAGATTTTATTACCTTGGGACATCCAAATGATGTTGAAGGGACTAACATAAAGGTCCATTGTTTTAGCTCGTATGAAACAGTGACATGGTTGCCATCATTGTGTGCAGACCCTTCAGCTAACTTACCTGACCATATAGCAGAATGTGACTTCATCTTACTGCCTTCCTGGGCATCAAACCATTGGATGATATGTAATACTTGCACAGCAACTACATCCTGGGCCGTGGAAAGAGTATGGACGTGATGATCTCAACGGTGCTCCAAGGCAGAATTGTTCAAATAACTGTGGAGTGTTTGTGTTGATGTCTGACATGGCTGCAGTAAGGAGATGGTGGTGCTTGCTCCTGCTAACAAATTATCCTGTGAAATCAGATGCTGAAAGAAAGCTACTCAGAAAAAGGCGCAAAGAAATGAAAACAGGTATAACTTTAATTAAAATAGGTTTGTAACAGCTAATCTGACAACTG
>TU459774
TGATATTAAACAAATAGACCAAGTACACTACCCCAGCCAAGGTTCAGTGATGGACATGACAGCCCTACGAAATGTGCAGCCAAACAGGGCATGCATCCACAAAGCAGTGACCAAATGAAGATGATAAAAAATGCTTTAAATGAAAAGGAATCACAACAACAATTTTTGGCTCAAGTAGGAGCAACAATTCTGGACAGATCAGATTTTATTACCTTGGGACATCCAAATGATGTTGAAGGGACTATTTTGAATGCCTGCCTTTCAATGGTCAGAGATATTGCTGACTTAAAGGACCATATAGCAGAATGTGACTTCATCTTACTGCCTTCCTGGGCATCAAACCATTGGATGATATGTAATACTTGCACAGCAACTACATCCTGGGCCGTGGAAAGAGTATGGACGTGATGATCTCAACGGTGCTCCAAGGCAGAATTGTTCAAATAACTGTGGAGTGTTTGTGTTGATGTAGGCACTCTATGTTGTAATGGGAGGTGTCTTTGATTTTGCTGAGTCTGACATGGCTGCAGTAAGGAGATGGTGGTGCTTGCTCCTGCTAACAAATTATCCTGTGAAATCAGATGCTGAAAGAAAGCTACTCAGAAAAAGGCGCAAAGAAATGAAAACAGGTATAACTTTAATTAAAATAGGTTTGTAACAGCTAATCTGACAACTG
>TU459771
CAAAATCATTTAATTAAAGTTCATTACTATTGTTTATGTCTGTTTTGATGTAACTTACTATTAATGTTACAGTAGGCACTCTATGTTGTAATGGGAGGTGTCTTTGATTTTGCTGAGTCTGACATGGCTGCAGTAAGGAGATGGTGGTGCTTGCTCCTGCTAACAAATTATCCTGTGAAATGCCACCTGAGATCCTGAGACATATCCTCATGAATGTGGTCAAAGAAGATGGAGATGTGGCCTTCTTCAGACTGTCTCTGATGTGCTGGCTTTTCCATGATGTTGTTTGTGAGGTATCATTCAGAAAAGAGGCTCATTGTGCCAGGCTTGACAGTGTTGTCAACTGGAGTGCATACTCCAGTGACTACAAGGAGATGCACCGAGTGCCATATAAAGTGACCAGTTGCCTTTGTTGTGGGGACTTATTTAAAGACTTCCCGCCAGGCTATATTGGAGATGGAAGGAAAGGAATCCTTCGTGCATTTTACTCGACCAAAGAGAAGGTTACTGCTCAGCAGACTGCTTCATCTGTGACGGCAA
>TU459772
CAAAATCATTTAATTAAAGTTCATTACTATTGTTTATGTCTGTTTTGATGTAACTTACTATTAATGTTACAGTAGGCACTCTATGTTGTAATGGGAGGTGTCTTTGATTTTGCTGAGTCTGACATGGCTGCAGTAAGGAGATGGTGGTGCTTGCTCCTGCTAACAAATTATCCTGTGAAATGCCACCTGAGATCCTGAGACATATCCTCATGAATGTGGTCAAAGAAGATGGAGATGTGGCCTTCTTCAGACTGTCTCTGATGTGCTGGCTTTTCCATGATGTTGTTTGTGAG
>TU459775
CAAAATCATTTAATTAAAGTTCATTACTATTGTTTATGTCTGTTTTGATGTAACTTACTATTAATGTTACAGTAGGCACTCTATGTTGTAATGGGAGGTGTCTTTGATTTTGCTGAGGTGAGCTATCAAAACTAATAATTTGGGAAAAAGTTTATTCTCAAAGGGTGATTGTGATTTACATTAAGCATATTTTCCAGTCTGACATGGCTGCAGTAAGGAGATGGTGGTGCTTGCTCCTGCTAACAAATTATCCTGTGAAATGCCACCTGAGATCCTGAGACATATCCTCATGAATGTGGTCAAAGAAGATGGAGATGTGGCCTTCTTCAGACTGTCTCTGATGTGCTGGCTTTTCCATGATGTTGTTTGTGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU459765 False 97 lncRNA 0.39 1 41355 41451
TU459770 False 312 TUCP 0.41 4 41518 43226
TU459774 True 321 TUCP 0.41 5 41355 43226
TU459771 False 179 TUCP 0.43 2 42603 42861
TU459772 False 179 lncRNA 0.40 2 42603 42861
TU459775 True 259 lncRNA 0.38 1 42603 42861

Neighbor

gene id symbol gene type direction distance location
CI01000258_00028166_00032821 NA coding upstream 7257 27921 ~ 33621 (+)
CI01000258_00000064_00004613 NA coding upstream 35437 64 ~ 5441 (+)
CI01000258_00045044_00048458 NA coding downstream 1459 45044 ~ 48458 (+)
CI01000258_00096312_00110058 NA coding downstream 52727 96312 ~ 111157 (+)
CI01000258_00137907_00154325 NA coding downstream 92161 135746 ~ 154356 (+)
G400526 NA non-coding upstream 575 14399 ~ 40303 (+)
G400539 NA non-coding downstream 1200 44785 ~ 63511 (+)
G400544 NA non-coding downstream 11199 54784 ~ 55264 (+)
G400561 NA non-coding downstream 67680 111265 ~ 113040 (+)
G400530 NA non-coding downstream 75727 119312 ~ 122131 (+)
G400533 NA other downstream 112864 156449 ~ 158626 (+)

Expression


Co-expression Network