G400561


Basic Information

Item Value
gene id G400561
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000258
NCBI id null
chromosome length 191677
location 111265 ~ 113040 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU459843
TGCTTATAGCTGTTTTTAATGAATATGAGATACAAACATTGGCAATCATCTTTATACCCCTCTTAGGTGCTGCCCATTTTGGCAAGAAAGTGCATAAATTACATTTCCGAAATAAAAAAATATTGCTGGTCATTGATTTTTACACACATAACCACAGTATCTTTAGAAAGCGGACAGAGAGTTTACAGTTCAGAATTACTCAGACTGTCATTATTAATACAGAAATGCATATATAAGCTCAAATACATTGAAAATACATAAAAATATGAATATTGTTCAATGTATAAAATTTTCTATCCTGTTTGTGACCTTCTCTTTCAATGGTCTCGCTGTGTTTAAGACTTGGAAGTAAACGCCCACTTCTATTATTGGGTAACAATTTTGCAAATTAAAATAATTTTCAACGTCCCTGCCATTACACATGTGGAATTGTTTTGAAAACTTCCGATGTTCAGCCATACATGTTTGAGCCAGAGTCTGATCCCGAATCAGAAGACAACGAACCTACACCTCAAATATGAAGGACACTCCAGTCTGCGACAGCTTGGTTATTAATCATCTTTATTTATATTTATTCCTTATGTATCTGTGAGGTAGTATTGTATTTTATTACATTGCTTGGTAATTAATCATCTTTATTTATATGTATTCCATATGTATCTGTGAGGTAGTATTGTGTTTTATTACATTATATTAGTGTTGAAACAAAGTCGCTACGGAAAGGTGAACACCTATTCAAAAACTTTTGCCAATAATGTGAAGCATTTATGCGTATTACATATGCTTCATAAGTCTTGGTTGTGGCAAATAAAGTTTAAGTACTTGGAGTTACCACAGTTATAGGTGACAGGATAACTAATGATATTTCATGTCAACGAATTATGAATTAAAATACTATTGTTGCACTGTCGTTCTTATATTCATCATTTTCATTAAAGTTAGTACGTATCAAACGACCTGTTTCAGACAAAGCTCTAGTGATACATGGTAAAAACACTGTTACGCTTTTTAAAAACGAATCAGCACTAAAATGAAGTGAATAAACAAACAGTGTCTTACTGACACAATCTGGAACGCTCTTCTGCACGAAACAGTGGGCGGGGCTTAAGAGTCAATGATGTAGAAAAGGCGGTCTTTCGTCAAATTATGACGTAATATTGTGACAAAATCCGAAACAAGATGTTTTTTGAGCTTGGTTTCATAAGCTGTTTTTGGACTAACAAGGAAGTTTTGAGTTCTGAAACTTACAGGATATTCTTATAGTACTTGACCTCTTACATCTCTAAAGATCAAGGAAAAATTGATTTCTCAATTCATGACCCCTTTAAAATCCTTGGGATGGATGGATGGATAGATAGATAGATAGATAGATAGATAGATAGATAGAAACATTGATAGACAGATAGATAGATCCCTGATCGTTAGCTGAAGTTCACTGGGCCATTGAAAACACCACCATGAAGAACAGGGGCCTTTACAGTTCCTCCATCTGAAGTTTTAATATTCATTGTAACTCCAGTGGTCTGAGCAGTTACAGATGTCCCACTGGGTGAAGCTCCATCTCCAGCAGAATCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU459843 True 1575 lncRNA 0.35 2 111265 113040

Neighbor

gene id symbol gene type direction distance location
CI01000258_00096312_00110058 NA coding upstream 108 96312 ~ 111157 (+)
CI01000258_00045044_00048458 NA coding upstream 62807 45044 ~ 48458 (+)
CI01000258_00042250_00044020 NA coding upstream 66828 42250 ~ 44437 (+)
CI01000258_00038193_00041078 NA coding upstream 69941 37596 ~ 41451 (+)
CI01000258_00028166_00032821 NA coding upstream 77644 27921 ~ 33621 (+)
CI01000258_00137907_00154325 NA coding downstream 22706 135746 ~ 154356 (+)
G400539 NA non-coding upstream 47754 44785 ~ 63511 (+)
G400544 NA non-coding upstream 56001 54784 ~ 55264 (+)
G400521 NA non-coding upstream 67680 41355 ~ 43226 (+)
G400526 NA non-coding upstream 70962 14399 ~ 40303 (+)
G400530 NA non-coding downstream 6272 119312 ~ 122131 (+)
G400533 NA other downstream 43409 156449 ~ 158626 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G128532 NA non-coding NC_053123.1 CM020920.1 32436982 ~ 32437184 (+)
bowfin (Amia calva) G137539 NA non-coding CM030138.1 CM030138.1 20757030 ~ 20757264 (+)